Hb_029866_120

Information

Type -
Description -
Location Contig29866: 92271-94459
Sequence    

Annotation

kegg
ID cic:CICLE_v10006070mg
description hypothetical protein
nr
ID XP_006422094.1
description hypothetical protein CICLE_v10006070mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067EYZ7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030903mg PE=4 SV=1
Gene Ontology
ID GO:0009073
description hypothetical protein CICLE_v10006070mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31219: 92210-94218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_120 0.0 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
2 Hb_001195_460 0.0958789715 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
3 Hb_000487_260 0.1002416278 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
4 Hb_013405_020 0.1036118242 - - -
5 Hb_003077_020 0.1064546131 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000413_240 0.1111251745 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
7 Hb_000137_040 0.1127424511 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
8 Hb_155215_020 0.1147804257 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
9 Hb_000599_260 0.1161176882 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
10 Hb_003994_160 0.1161450985 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
11 Hb_019053_060 0.1164342975 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
12 Hb_000373_050 0.1166908372 - - PREDICTED: protein WHI3 [Jatropha curcas]
13 Hb_000796_160 0.119547892 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
14 Hb_001369_610 0.1207868404 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
15 Hb_000261_020 0.1218341987 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
16 Hb_003647_140 0.1233210264 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
17 Hb_000173_250 0.1236510064 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
18 Hb_005016_040 0.1238431059 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
19 Hb_002307_180 0.1242868628 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
20 Hb_007975_060 0.1261112032 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_029866_120 Hb_029866_120 Hb_001195_460 Hb_001195_460 Hb_029866_120--Hb_001195_460 Hb_000487_260 Hb_000487_260 Hb_029866_120--Hb_000487_260 Hb_013405_020 Hb_013405_020 Hb_029866_120--Hb_013405_020 Hb_003077_020 Hb_003077_020 Hb_029866_120--Hb_003077_020 Hb_000413_240 Hb_000413_240 Hb_029866_120--Hb_000413_240 Hb_000137_040 Hb_000137_040 Hb_029866_120--Hb_000137_040 Hb_001935_100 Hb_001935_100 Hb_001195_460--Hb_001935_100 Hb_107879_010 Hb_107879_010 Hb_001195_460--Hb_107879_010 Hb_004440_020 Hb_004440_020 Hb_001195_460--Hb_004440_020 Hb_000227_170 Hb_000227_170 Hb_001195_460--Hb_000227_170 Hb_000051_060 Hb_000051_060 Hb_001195_460--Hb_000051_060 Hb_000811_070 Hb_000811_070 Hb_000487_260--Hb_000811_070 Hb_006846_150 Hb_006846_150 Hb_000487_260--Hb_006846_150 Hb_019053_060 Hb_019053_060 Hb_000487_260--Hb_019053_060 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_007975_060 Hb_007975_060 Hb_013405_020--Hb_007975_060 Hb_013405_020--Hb_008421_020 Hb_005016_040 Hb_005016_040 Hb_013405_020--Hb_005016_040 Hb_002157_120 Hb_002157_120 Hb_013405_020--Hb_002157_120 Hb_006132_090 Hb_006132_090 Hb_013405_020--Hb_006132_090 Hb_004754_050 Hb_004754_050 Hb_013405_020--Hb_004754_050 Hb_146673_010 Hb_146673_010 Hb_003077_020--Hb_146673_010 Hb_018133_020 Hb_018133_020 Hb_003077_020--Hb_018133_020 Hb_004157_020 Hb_004157_020 Hb_003077_020--Hb_004157_020 Hb_012114_070 Hb_012114_070 Hb_003077_020--Hb_012114_070 Hb_000599_260 Hb_000599_260 Hb_003077_020--Hb_000599_260 Hb_003728_060 Hb_003728_060 Hb_003077_020--Hb_003728_060 Hb_000163_100 Hb_000163_100 Hb_000413_240--Hb_000163_100 Hb_001863_380 Hb_001863_380 Hb_000413_240--Hb_001863_380 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_004041_020 Hb_004041_020 Hb_000413_240--Hb_004041_020 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_002946_190 Hb_002946_190 Hb_000413_240--Hb_002946_190 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4309 9.6509 20.1012 15.6894 8.75358 10.2032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84745 27.64 10.0415 4.41719 21.9816

CAGE analysis