Hb_001377_400

Information

Type -
Description -
Location Contig1377: 378384-389919
Sequence    

Annotation

kegg
ID rcu:RCOM_0881870
description beta-fructofuranosidase, putative
nr
ID AHA82516.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q67XD9
description Alkaline/neutral invertase CINV2 OS=Arabidopsis thaliana GN=CINV2 PE=1 SV=1
trembl
ID V5N411
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV5 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_400 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_127008_010 0.1822280299 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
3 Hb_002157_130 0.222658215 - - -
4 Hb_000144_080 0.2550431643 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
5 Hb_013399_010 0.2594245018 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
6 Hb_001504_050 0.2677711584 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
7 Hb_001301_240 0.2699094779 - - -
8 Hb_002972_010 0.2754421765 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
9 Hb_003322_010 0.2777366628 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_017002_020 0.2863949284 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
11 Hb_001476_070 0.2901204587 - - MinE protein [Manihot esculenta]
12 Hb_000788_130 0.2905689112 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
13 Hb_027760_010 0.2914364701 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
14 Hb_036790_090 0.2927903104 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012033_020 0.2928268023 - - -
16 Hb_009486_150 0.2952666928 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
17 Hb_003001_110 0.2960860524 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
18 Hb_000099_230 0.2965743184 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
19 Hb_001114_160 0.2972705152 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
20 Hb_000228_090 0.2977884409 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001377_400 Hb_001377_400 Hb_127008_010 Hb_127008_010 Hb_001377_400--Hb_127008_010 Hb_002157_130 Hb_002157_130 Hb_001377_400--Hb_002157_130 Hb_000144_080 Hb_000144_080 Hb_001377_400--Hb_000144_080 Hb_013399_010 Hb_013399_010 Hb_001377_400--Hb_013399_010 Hb_001504_050 Hb_001504_050 Hb_001377_400--Hb_001504_050 Hb_001301_240 Hb_001301_240 Hb_001377_400--Hb_001301_240 Hb_127008_010--Hb_001504_050 Hb_127008_010--Hb_000144_080 Hb_009486_150 Hb_009486_150 Hb_127008_010--Hb_009486_150 Hb_027760_010 Hb_027760_010 Hb_127008_010--Hb_027760_010 Hb_003371_180 Hb_003371_180 Hb_127008_010--Hb_003371_180 Hb_001369_610 Hb_001369_610 Hb_002157_130--Hb_001369_610 Hb_000679_050 Hb_000679_050 Hb_002157_130--Hb_000679_050 Hb_007416_050 Hb_007416_050 Hb_002157_130--Hb_007416_050 Hb_146673_010 Hb_146673_010 Hb_002157_130--Hb_146673_010 Hb_007533_010 Hb_007533_010 Hb_002157_130--Hb_007533_010 Hb_000300_080 Hb_000300_080 Hb_002157_130--Hb_000300_080 Hb_000297_230 Hb_000297_230 Hb_000144_080--Hb_000297_230 Hb_003185_110 Hb_003185_110 Hb_000144_080--Hb_003185_110 Hb_003058_080 Hb_003058_080 Hb_000144_080--Hb_003058_080 Hb_001998_120 Hb_001998_120 Hb_000144_080--Hb_001998_120 Hb_002768_030 Hb_002768_030 Hb_000144_080--Hb_002768_030 Hb_000025_230 Hb_000025_230 Hb_000144_080--Hb_000025_230 Hb_013399_010--Hb_001504_050 Hb_000866_240 Hb_000866_240 Hb_013399_010--Hb_000866_240 Hb_000029_080 Hb_000029_080 Hb_013399_010--Hb_000029_080 Hb_009476_020 Hb_009476_020 Hb_013399_010--Hb_009476_020 Hb_007885_010 Hb_007885_010 Hb_013399_010--Hb_007885_010 Hb_000676_140 Hb_000676_140 Hb_013399_010--Hb_000676_140 Hb_000699_040 Hb_000699_040 Hb_001504_050--Hb_000699_040 Hb_004052_020 Hb_004052_020 Hb_001504_050--Hb_004052_020 Hb_001504_050--Hb_003058_080 Hb_000451_060 Hb_000451_060 Hb_001504_050--Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_001504_050--Hb_000191_030 Hb_001504_050--Hb_000297_230 Hb_000975_220 Hb_000975_220 Hb_001301_240--Hb_000975_220 Hb_000035_250 Hb_000035_250 Hb_001301_240--Hb_000035_250 Hb_000059_340 Hb_000059_340 Hb_001301_240--Hb_000059_340 Hb_006261_090 Hb_006261_090 Hb_001301_240--Hb_006261_090 Hb_158144_010 Hb_158144_010 Hb_001301_240--Hb_158144_010 Hb_001671_040 Hb_001671_040 Hb_001301_240--Hb_001671_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141887 0.214306 0.854907 0.0224925 0.444657 0.248485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.741706 0.909396 0 0.00538905 0.202058

CAGE analysis