Hb_000029_080

Information

Type -
Description -
Location Contig29: 89406-95837
Sequence    

Annotation

kegg
ID rcu:RCOM_1282180
description Cold-inducible RNA-binding protein, putative
nr
ID XP_012077851.1
description PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
swissprot
ID Q28IQ9
description Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1
trembl
ID A0A067KA53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13563 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_080 0.0 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
2 Hb_000568_060 0.1485296548 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
3 Hb_005211_180 0.1506224664 - - Transmembrane protein TPARL, putative [Ricinus communis]
4 Hb_177215_040 0.1722353912 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
5 Hb_000045_300 0.180606461 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
6 Hb_000164_100 0.1844699064 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
7 Hb_002686_190 0.1871941691 - - -
8 Hb_012565_070 0.1880189514 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_076778_010 0.1896415982 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_127194_010 0.1900206489 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
11 Hb_001511_150 0.1903760335 - - monovalent cation:proton antiporter, putative [Ricinus communis]
12 Hb_118282_010 0.1920518288 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
13 Hb_000475_040 0.1921246597 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_080362_010 0.1940052399 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
15 Hb_000161_130 0.1956147028 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
16 Hb_013399_010 0.1960174089 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
17 Hb_000256_090 0.1961914222 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
18 Hb_004724_270 0.1969437118 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
19 Hb_000367_160 0.1973471289 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
20 Hb_000866_240 0.2024471525 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000029_080 Hb_000029_080 Hb_000568_060 Hb_000568_060 Hb_000029_080--Hb_000568_060 Hb_005211_180 Hb_005211_180 Hb_000029_080--Hb_005211_180 Hb_177215_040 Hb_177215_040 Hb_000029_080--Hb_177215_040 Hb_000045_300 Hb_000045_300 Hb_000029_080--Hb_000045_300 Hb_000164_100 Hb_000164_100 Hb_000029_080--Hb_000164_100 Hb_002686_190 Hb_002686_190 Hb_000029_080--Hb_002686_190 Hb_002092_120 Hb_002092_120 Hb_000568_060--Hb_002092_120 Hb_000568_060--Hb_002686_190 Hb_000950_070 Hb_000950_070 Hb_000568_060--Hb_000950_070 Hb_003848_040 Hb_003848_040 Hb_000568_060--Hb_003848_040 Hb_003020_210 Hb_003020_210 Hb_000568_060--Hb_003020_210 Hb_004724_270 Hb_004724_270 Hb_005211_180--Hb_004724_270 Hb_092462_020 Hb_092462_020 Hb_005211_180--Hb_092462_020 Hb_000321_160 Hb_000321_160 Hb_005211_180--Hb_000321_160 Hb_005211_180--Hb_000164_100 Hb_012565_070 Hb_012565_070 Hb_005211_180--Hb_012565_070 Hb_003124_150 Hb_003124_150 Hb_005211_180--Hb_003124_150 Hb_177215_040--Hb_000568_060 Hb_177215_040--Hb_000045_300 Hb_001449_010 Hb_001449_010 Hb_177215_040--Hb_001449_010 Hb_177215_040--Hb_003848_040 Hb_001105_170 Hb_001105_170 Hb_177215_040--Hb_001105_170 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000327_230 Hb_000327_230 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_000045_300--Hb_012565_070 Hb_002027_350 Hb_002027_350 Hb_000164_100--Hb_002027_350 Hb_044653_040 Hb_044653_040 Hb_000164_100--Hb_044653_040 Hb_000176_020 Hb_000176_020 Hb_000164_100--Hb_000176_020 Hb_003669_020 Hb_003669_020 Hb_000164_100--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_000164_100--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_000164_100--Hb_004712_210 Hb_003207_180 Hb_003207_180 Hb_002686_190--Hb_003207_180 Hb_007101_300 Hb_007101_300 Hb_002686_190--Hb_007101_300 Hb_005489_060 Hb_005489_060 Hb_002686_190--Hb_005489_060 Hb_007878_010 Hb_007878_010 Hb_002686_190--Hb_007878_010 Hb_006588_170 Hb_006588_170 Hb_002686_190--Hb_006588_170 Hb_000032_380 Hb_000032_380 Hb_002686_190--Hb_000032_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0369778 0.232137 0.319492 0.131676 0.0295523 0.149444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.270844 0.319445 0.0962848 0.0431034 0.106847

CAGE analysis