Hb_177215_040

Information

Type -
Description -
Location Contig177215: 53988-58721
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09870g
description POPTRDRAFT_709269; hypothetical protein
nr
ID XP_012086820.1
description PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20538 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17016: 54118-58665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177215_040 0.0 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
2 Hb_000568_060 0.1666048628 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
3 Hb_000029_080 0.1722353912 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
4 Hb_000045_300 0.1726789191 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
5 Hb_001449_010 0.181669621 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003848_040 0.1831076328 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
7 Hb_001105_170 0.1833397546 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
8 Hb_003362_030 0.1834825477 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
9 Hb_002228_070 0.1843409111 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
10 Hb_003001_110 0.1858685977 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
11 Hb_001096_090 0.1865886304 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
12 Hb_012565_070 0.1883020116 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_010812_020 0.1904943079 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
14 Hb_153258_050 0.1910024998 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
15 Hb_003207_180 0.1911809977 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
16 Hb_007741_130 0.1917876027 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
17 Hb_001454_070 0.1929980635 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
18 Hb_000975_220 0.1932519116 - - Histone H2B [Medicago truncatula]
19 Hb_002686_190 0.1941938411 - - -
20 Hb_000300_260 0.1954036753 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_177215_040 Hb_177215_040 Hb_000568_060 Hb_000568_060 Hb_177215_040--Hb_000568_060 Hb_000029_080 Hb_000029_080 Hb_177215_040--Hb_000029_080 Hb_000045_300 Hb_000045_300 Hb_177215_040--Hb_000045_300 Hb_001449_010 Hb_001449_010 Hb_177215_040--Hb_001449_010 Hb_003848_040 Hb_003848_040 Hb_177215_040--Hb_003848_040 Hb_001105_170 Hb_001105_170 Hb_177215_040--Hb_001105_170 Hb_000568_060--Hb_000029_080 Hb_002092_120 Hb_002092_120 Hb_000568_060--Hb_002092_120 Hb_002686_190 Hb_002686_190 Hb_000568_060--Hb_002686_190 Hb_000950_070 Hb_000950_070 Hb_000568_060--Hb_000950_070 Hb_000568_060--Hb_003848_040 Hb_003020_210 Hb_003020_210 Hb_000568_060--Hb_003020_210 Hb_005211_180 Hb_005211_180 Hb_000029_080--Hb_005211_180 Hb_000029_080--Hb_000045_300 Hb_000164_100 Hb_000164_100 Hb_000029_080--Hb_000164_100 Hb_000029_080--Hb_002686_190 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000327_230 Hb_000327_230 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070 Hb_000331_430 Hb_000331_430 Hb_001449_010--Hb_000331_430 Hb_002811_290 Hb_002811_290 Hb_001449_010--Hb_002811_290 Hb_001234_070 Hb_001234_070 Hb_001449_010--Hb_001234_070 Hb_048898_010 Hb_048898_010 Hb_001449_010--Hb_048898_010 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060 Hb_003848_040--Hb_001105_170 Hb_003848_040--Hb_012565_070 Hb_012340_090 Hb_012340_090 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_001105_170--Hb_012340_090 Hb_002343_040 Hb_002343_040 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_001105_170--Hb_012565_070 Hb_001105_170--Hb_000300_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.477209 1.38034 3.58374 1.30229 0.615335 1.14794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67122 2.10071 0.899177 0.792745 0.181602

CAGE analysis