Hb_171529_010

Information

Type -
Description -
Location Contig171529: 322-2265
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171529_010 0.0 - - -
2 Hb_000347_510 0.2359605064 - - actin binding protein, putative [Ricinus communis]
3 Hb_000931_030 0.2446222923 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
4 Hb_004586_450 0.2476006427 - - -
5 Hb_007574_060 0.2481469491 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
6 Hb_008442_010 0.2533932744 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
7 Hb_078604_010 0.2631828877 - - -
8 Hb_056768_010 0.2682690973 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
9 Hb_012532_030 0.2710286444 - - -
10 Hb_000048_100 0.2772771592 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007333_010 0.2869746164 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000832_240 0.2949944704 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005595_020 0.2984872963 - - -
14 Hb_000348_040 0.2987914358 - - -
15 Hb_015401_010 0.2989057913 - - hypothetical protein VITISV_001548 [Vitis vinifera]
16 Hb_030765_010 0.3053433507 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
17 Hb_012135_010 0.3076792257 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_007765_120 0.3129562537 - - glycogen phosphorylase, putative [Ricinus communis]
19 Hb_015091_010 0.3157833032 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_003116_020 0.3180527361 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]

Gene co-expression network

sample Hb_171529_010 Hb_171529_010 Hb_000347_510 Hb_000347_510 Hb_171529_010--Hb_000347_510 Hb_000931_030 Hb_000931_030 Hb_171529_010--Hb_000931_030 Hb_004586_450 Hb_004586_450 Hb_171529_010--Hb_004586_450 Hb_007574_060 Hb_007574_060 Hb_171529_010--Hb_007574_060 Hb_008442_010 Hb_008442_010 Hb_171529_010--Hb_008442_010 Hb_078604_010 Hb_078604_010 Hb_171529_010--Hb_078604_010 Hb_000414_030 Hb_000414_030 Hb_000347_510--Hb_000414_030 Hb_000832_240 Hb_000832_240 Hb_000347_510--Hb_000832_240 Hb_068946_010 Hb_068946_010 Hb_000347_510--Hb_068946_010 Hb_120221_010 Hb_120221_010 Hb_000347_510--Hb_120221_010 Hb_080147_090 Hb_080147_090 Hb_000347_510--Hb_080147_090 Hb_003746_060 Hb_003746_060 Hb_000347_510--Hb_003746_060 Hb_000025_100 Hb_000025_100 Hb_000931_030--Hb_000025_100 Hb_114839_010 Hb_114839_010 Hb_000931_030--Hb_114839_010 Hb_001544_020 Hb_001544_020 Hb_000931_030--Hb_001544_020 Hb_141383_010 Hb_141383_010 Hb_000931_030--Hb_141383_010 Hb_126112_010 Hb_126112_010 Hb_000931_030--Hb_126112_010 Hb_056768_010 Hb_056768_010 Hb_004586_450--Hb_056768_010 Hb_000048_100 Hb_000048_100 Hb_004586_450--Hb_000048_100 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_000562_080 Hb_000562_080 Hb_004586_450--Hb_000562_080 Hb_001047_140 Hb_001047_140 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_163413_010 Hb_163413_010 Hb_007574_060--Hb_163413_010 Hb_007574_060--Hb_000048_100 Hb_001405_130 Hb_001405_130 Hb_007574_060--Hb_001405_130 Hb_007574_060--Hb_000832_240 Hb_007574_060--Hb_008442_010 Hb_000348_040 Hb_000348_040 Hb_007574_060--Hb_000348_040 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_008442_010--Hb_000025_100 Hb_008442_010--Hb_001405_130 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_015401_010 Hb_015401_010 Hb_078604_010--Hb_015401_010 Hb_012532_030 Hb_012532_030 Hb_078604_010--Hb_012532_030 Hb_086859_010 Hb_086859_010 Hb_078604_010--Hb_086859_010 Hb_078604_010--Hb_056768_010 Hb_029982_010 Hb_029982_010 Hb_078604_010--Hb_029982_010 Hb_004502_080 Hb_004502_080 Hb_078604_010--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0393152 0.033229 0.0913652 0 0 0.359248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.273121 0.214679 0 0.0292314 0

CAGE analysis