Hb_147123_010

Information

Type -
Description -
Location Contig147123: 138-543
Sequence    

Annotation

kegg
ID rcu:RCOM_1622040
description Chorismate mutase, chloroplast precursor, putative (EC:5.4.99.5)
nr
ID XP_002512128.1
description Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9C544
description Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana GN=CM3 PE=1 SV=1
trembl
ID B9RCY0
description Chorismate mutase, chloroplast, putative OS=Ricinus communis GN=RCOM_1622040 PE=4 SV=1
Gene Ontology
ID GO:0016853
description chorismate mutase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147123_010 0.0 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
2 Hb_000025_100 0.1877241613 - - -
3 Hb_121550_010 0.1891410648 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008442_010 0.2000756103 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
5 Hb_007545_050 0.2409593308 - - -
6 Hb_000048_090 0.2416100565 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
7 Hb_000265_130 0.2454207055 - - -
8 Hb_010504_030 0.2475557263 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
9 Hb_003077_120 0.2480244629 - - -
10 Hb_013492_010 0.2495101903 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
11 Hb_000261_360 0.2495428574 - - unknown [Lotus japonicus]
12 Hb_166480_010 0.2499554237 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
13 Hb_004243_010 0.2502387094 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
14 Hb_000289_080 0.2510360323 - - conserved hypothetical protein [Ricinus communis]
15 Hb_136765_010 0.2554107535 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
16 Hb_001405_130 0.2559319198 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
17 Hb_000001_040 0.2576599828 - - unnamed protein product [Coffea canephora]
18 Hb_000320_320 0.258062605 - - hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
19 Hb_000994_110 0.2626486177 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000048_100 0.2654896663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_147123_010 Hb_147123_010 Hb_000025_100 Hb_000025_100 Hb_147123_010--Hb_000025_100 Hb_121550_010 Hb_121550_010 Hb_147123_010--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_147123_010--Hb_008442_010 Hb_007545_050 Hb_007545_050 Hb_147123_010--Hb_007545_050 Hb_000048_090 Hb_000048_090 Hb_147123_010--Hb_000048_090 Hb_000265_130 Hb_000265_130 Hb_147123_010--Hb_000265_130 Hb_126112_010 Hb_126112_010 Hb_000025_100--Hb_126112_010 Hb_000025_100--Hb_121550_010 Hb_000025_100--Hb_008442_010 Hb_021888_110 Hb_021888_110 Hb_000025_100--Hb_021888_110 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_000832_240 Hb_000832_240 Hb_121550_010--Hb_000832_240 Hb_121550_010--Hb_008442_010 Hb_000122_030 Hb_000122_030 Hb_121550_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_121550_010--Hb_115919_010 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_001405_130 Hb_001405_130 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_000994_110 Hb_000994_110 Hb_007545_050--Hb_000994_110 Hb_010504_030 Hb_010504_030 Hb_007545_050--Hb_010504_030 Hb_182964_010 Hb_182964_010 Hb_007545_050--Hb_182964_010 Hb_166480_010 Hb_166480_010 Hb_007545_050--Hb_166480_010 Hb_006995_040 Hb_006995_040 Hb_007545_050--Hb_006995_040 Hb_082407_010 Hb_082407_010 Hb_007545_050--Hb_082407_010 Hb_162999_010 Hb_162999_010 Hb_000048_090--Hb_162999_010 Hb_004025_030 Hb_004025_030 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_126398_010 Hb_126398_010 Hb_000048_090--Hb_126398_010 Hb_002153_010 Hb_002153_010 Hb_000048_090--Hb_002153_010 Hb_000001_040 Hb_000001_040 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_000265_130--Hb_010504_030 Hb_003581_010 Hb_003581_010 Hb_000265_130--Hb_003581_010 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_007188_020 Hb_007188_020 Hb_000265_130--Hb_007188_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797246 0 0.365691 2.26987 0.615877 6.8056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73429 2.21168 0 0 0

CAGE analysis