Hb_169488_010

Information

Type -
Description -
Location Contig169488: 2-224
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_011020077.1
description PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9HAN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07230g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169488_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
2 Hb_003702_050 0.087663699 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
3 Hb_001951_280 0.1598837584 - - -
4 Hb_063511_010 0.169271495 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
5 Hb_001544_020 0.1997319518 - - -
6 Hb_015091_010 0.2084734406 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_000003_690 0.2144706478 - - -
8 Hb_157340_010 0.2241526642 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
9 Hb_005222_010 0.2297171677 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
10 Hb_005595_020 0.2364568183 - - -
11 Hb_126398_010 0.2389360282 - - -
12 Hb_001981_080 0.2397684765 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
13 Hb_002365_010 0.2464255102 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
14 Hb_001014_200 0.2858518351 - - -
15 Hb_075642_010 0.2883730367 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
16 Hb_000316_090 0.289309718 - - -
17 Hb_135403_010 0.2953689652 - - HEV1.1 [Hevea brasiliensis]
18 Hb_006501_030 0.3075498657 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
19 Hb_145827_010 0.3081932984 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
20 Hb_003621_010 0.3082777004 - - -

Gene co-expression network

sample Hb_169488_010 Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_169488_010--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_169488_010--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_169488_010--Hb_063511_010 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_015091_010 Hb_015091_010 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_003702_050--Hb_063511_010 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_001951_280--Hb_063511_010 Hb_001951_280--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_001951_280--Hb_000348_040 Hb_005063_070 Hb_005063_070 Hb_001951_280--Hb_005063_070 Hb_063511_010--Hb_015091_010 Hb_063511_010--Hb_000348_040 Hb_006501_030 Hb_006501_030 Hb_063511_010--Hb_006501_030 Hb_005222_010 Hb_005222_010 Hb_001544_020--Hb_005222_010 Hb_001544_020--Hb_003702_050 Hb_001981_080 Hb_001981_080 Hb_001544_020--Hb_001981_080 Hb_000931_030 Hb_000931_030 Hb_001544_020--Hb_000931_030 Hb_002365_010 Hb_002365_010 Hb_001544_020--Hb_002365_010 Hb_004297_030 Hb_004297_030 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_000348_040 Hb_088496_010 Hb_088496_010 Hb_015091_010--Hb_088496_010 Hb_015091_010--Hb_006501_030 Hb_075642_010 Hb_075642_010 Hb_000003_690--Hb_075642_010 Hb_000003_690--Hb_002365_010 Hb_000003_690--Hb_126398_010 Hb_000003_690--Hb_001981_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 39.9375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5237 9.03334 0 0 0

CAGE analysis