Hb_008202_030

Information

Type -
Description -
Location Contig8202: 9811-10419
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13200g
description hypothetical protein
nr
ID KJB14238.1
description hypothetical protein B456_002G115600 [Gossypium raimondii]
swissprot
ID Q60855
description Receptor-interacting serine/threonine-protein kinase 1 OS=Mus musculus GN=Ripk1 PE=1 SV=1
trembl
ID A0A0D2NLK2
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G115600 PE=4 SV=1
Gene Ontology
ID GO:0004674
description receptor serine threonine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008202_030 0.0 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
2 Hb_000800_100 0.0146475363 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
3 Hb_009722_020 0.08195131 - - -
4 Hb_023813_010 0.0966284553 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
5 Hb_000092_210 0.1280859325 - - -
6 Hb_003621_010 0.170295285 - - -
7 Hb_007426_240 0.171099681 - - -
8 Hb_000529_120 0.1928792609 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
9 Hb_000573_030 0.232833634 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
10 Hb_069868_010 0.2358091448 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
11 Hb_007044_150 0.2445897228 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
12 Hb_000173_300 0.2613808417 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
13 Hb_026113_020 0.2718974827 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_006684_020 0.274971529 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000976_220 0.2856028458 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
16 Hb_127120_010 0.2856547428 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_007407_030 0.2858465052 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
18 Hb_000246_140 0.3086772656 - - xylulose kinase, putative [Ricinus communis]
19 Hb_003972_020 0.3110136198 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000252_140 0.311881759 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_008202_030 Hb_008202_030 Hb_000800_100 Hb_000800_100 Hb_008202_030--Hb_000800_100 Hb_009722_020 Hb_009722_020 Hb_008202_030--Hb_009722_020 Hb_023813_010 Hb_023813_010 Hb_008202_030--Hb_023813_010 Hb_000092_210 Hb_000092_210 Hb_008202_030--Hb_000092_210 Hb_003621_010 Hb_003621_010 Hb_008202_030--Hb_003621_010 Hb_007426_240 Hb_007426_240 Hb_008202_030--Hb_007426_240 Hb_000800_100--Hb_009722_020 Hb_000800_100--Hb_023813_010 Hb_000800_100--Hb_000092_210 Hb_000800_100--Hb_003621_010 Hb_000800_100--Hb_007426_240 Hb_009722_020--Hb_023813_010 Hb_009722_020--Hb_000092_210 Hb_009722_020--Hb_007426_240 Hb_000529_120 Hb_000529_120 Hb_009722_020--Hb_000529_120 Hb_023813_010--Hb_000092_210 Hb_023813_010--Hb_007426_240 Hb_023813_010--Hb_000529_120 Hb_000092_210--Hb_007426_240 Hb_000092_210--Hb_000529_120 Hb_000173_300 Hb_000173_300 Hb_000092_210--Hb_000173_300 Hb_069868_010 Hb_069868_010 Hb_003621_010--Hb_069868_010 Hb_000246_140 Hb_000246_140 Hb_003621_010--Hb_000246_140 Hb_075642_010 Hb_075642_010 Hb_003621_010--Hb_075642_010 Hb_005222_010 Hb_005222_010 Hb_003621_010--Hb_005222_010 Hb_007426_240--Hb_000529_120 Hb_007426_240--Hb_000173_300 Hb_026113_020 Hb_026113_020 Hb_007426_240--Hb_026113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.15164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0776279 0 0 0

CAGE analysis