Hb_026113_020

Information

Type -
Description -
Location Contig26113: 10709-13360
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026113_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_006684_020 0.0031578244 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000173_300 0.0107874891 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
4 Hb_000976_220 0.0140952534 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
5 Hb_127120_010 0.0141487076 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_007407_030 0.0143462296 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
7 Hb_000529_120 0.0804873689 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
8 Hb_007426_240 0.1024531416 - - -
9 Hb_000092_210 0.1455711415 - - -
10 Hb_023813_010 0.1768861593 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
11 Hb_009722_020 0.1914335289 - - -
12 Hb_001045_100 0.2258525772 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
13 Hb_002249_060 0.2699855609 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_008202_030 0.2718974827 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
15 Hb_000800_100 0.2861367987 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
16 Hb_000573_030 0.2880184889 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
17 Hb_038098_010 0.3241077026 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
18 Hb_000252_140 0.3267328296 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001377_390 0.3290506561 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
20 Hb_065525_140 0.331869585 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_026113_020 Hb_026113_020 Hb_006684_020 Hb_006684_020 Hb_026113_020--Hb_006684_020 Hb_000173_300 Hb_000173_300 Hb_026113_020--Hb_000173_300 Hb_000976_220 Hb_000976_220 Hb_026113_020--Hb_000976_220 Hb_127120_010 Hb_127120_010 Hb_026113_020--Hb_127120_010 Hb_007407_030 Hb_007407_030 Hb_026113_020--Hb_007407_030 Hb_000529_120 Hb_000529_120 Hb_026113_020--Hb_000529_120 Hb_006684_020--Hb_000976_220 Hb_006684_020--Hb_127120_010 Hb_006684_020--Hb_007407_030 Hb_006684_020--Hb_000173_300 Hb_006684_020--Hb_000529_120 Hb_000173_300--Hb_000976_220 Hb_000173_300--Hb_127120_010 Hb_000173_300--Hb_007407_030 Hb_000173_300--Hb_000529_120 Hb_000976_220--Hb_127120_010 Hb_000976_220--Hb_007407_030 Hb_000976_220--Hb_000529_120 Hb_127120_010--Hb_007407_030 Hb_127120_010--Hb_000529_120 Hb_007407_030--Hb_000529_120 Hb_007426_240 Hb_007426_240 Hb_000529_120--Hb_007426_240 Hb_000092_210 Hb_000092_210 Hb_000529_120--Hb_000092_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00691673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0131874 0 0 0

CAGE analysis