Hb_007426_240

Information

Type -
Description -
Location Contig7426: 238258-239947
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_240 0.0 - - -
2 Hb_000529_120 0.0220326102 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
3 Hb_000092_210 0.0433488643 - - -
4 Hb_023813_010 0.0749126792 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
5 Hb_009722_020 0.0895987177 - - -
6 Hb_000173_300 0.0917045724 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
7 Hb_026113_020 0.1024531416 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_006684_020 0.1055977165 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000976_220 0.1164826298 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
10 Hb_127120_010 0.1165358019 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_007407_030 0.116732279 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
12 Hb_008202_030 0.171099681 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
13 Hb_000800_100 0.1855719369 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
14 Hb_000573_030 0.235816498 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
15 Hb_000252_140 0.2952699538 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_003972_020 0.3087374885 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001045_100 0.3247028699 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
18 Hb_163413_010 0.3260040188 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
19 Hb_007044_150 0.3317810086 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
20 Hb_001377_390 0.3329883781 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]

Gene co-expression network

sample Hb_007426_240 Hb_007426_240 Hb_000529_120 Hb_000529_120 Hb_007426_240--Hb_000529_120 Hb_000092_210 Hb_000092_210 Hb_007426_240--Hb_000092_210 Hb_023813_010 Hb_023813_010 Hb_007426_240--Hb_023813_010 Hb_009722_020 Hb_009722_020 Hb_007426_240--Hb_009722_020 Hb_000173_300 Hb_000173_300 Hb_007426_240--Hb_000173_300 Hb_026113_020 Hb_026113_020 Hb_007426_240--Hb_026113_020 Hb_000529_120--Hb_000092_210 Hb_000529_120--Hb_000173_300 Hb_000529_120--Hb_026113_020 Hb_006684_020 Hb_006684_020 Hb_000529_120--Hb_006684_020 Hb_000976_220 Hb_000976_220 Hb_000529_120--Hb_000976_220 Hb_000092_210--Hb_023813_010 Hb_000092_210--Hb_009722_020 Hb_008202_030 Hb_008202_030 Hb_000092_210--Hb_008202_030 Hb_000092_210--Hb_000173_300 Hb_023813_010--Hb_009722_020 Hb_023813_010--Hb_008202_030 Hb_023813_010--Hb_000529_120 Hb_000800_100 Hb_000800_100 Hb_023813_010--Hb_000800_100 Hb_009722_020--Hb_008202_030 Hb_009722_020--Hb_000800_100 Hb_009722_020--Hb_000529_120 Hb_000173_300--Hb_026113_020 Hb_000173_300--Hb_006684_020 Hb_000173_300--Hb_000976_220 Hb_127120_010 Hb_127120_010 Hb_000173_300--Hb_127120_010 Hb_007407_030 Hb_007407_030 Hb_000173_300--Hb_007407_030 Hb_026113_020--Hb_006684_020 Hb_026113_020--Hb_000976_220 Hb_026113_020--Hb_127120_010 Hb_026113_020--Hb_007407_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0738787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0859548 0 0 0

CAGE analysis