Hb_006692_050

Information

Type -
Description -
Location Contig6692: 45087-46554
Sequence    

Annotation

kegg
ID tcc:TCM_030970
description Chloroplastic lipocalin
nr
ID XP_007020937.1
description Chloroplastic lipocalin [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F6X3
description Chloroplastic lipocalin OS=Theobroma cacao GN=TCM_030970 PE=4 SV=1
Gene Ontology
ID GO:0009535
description apolipoprotein d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53346: 40307-45064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006692_050 0.0 - - Chloroplastic lipocalin [Theobroma cacao]
2 Hb_042026_010 0.0621876864 - - RNA binding protein, putative [Ricinus communis]
3 Hb_007761_010 0.0825507344 - - -
4 Hb_128173_010 0.0852460016 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
5 Hb_111332_010 0.1112468218 - - Dihydroneopterin aldolase [Morus notabilis]
6 Hb_000795_010 0.122981479 - - -
7 Hb_105480_010 0.1247798894 - - -
8 Hb_005542_020 0.1480133409 - - lupus la ribonucleoprotein, putative [Ricinus communis]
9 Hb_000005_210 0.1834934437 - - -
10 Hb_000041_170 0.1834934437 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
11 Hb_000047_040 0.1834934437 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
12 Hb_000072_260 0.1834934437 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
13 Hb_000081_170 0.1834934437 - - -
14 Hb_000088_250 0.1834934437 - - -
15 Hb_000110_220 0.1834934437 - - -
16 Hb_000110_360 0.1834934437 - - -
17 Hb_000111_510 0.1834934437 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000122_170 0.1834934437 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
19 Hb_000122_180 0.1834934437 - - -
20 Hb_000130_150 0.1834934437 - - -

Gene co-expression network

sample Hb_006692_050 Hb_006692_050 Hb_042026_010 Hb_042026_010 Hb_006692_050--Hb_042026_010 Hb_007761_010 Hb_007761_010 Hb_006692_050--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_006692_050--Hb_128173_010 Hb_111332_010 Hb_111332_010 Hb_006692_050--Hb_111332_010 Hb_000795_010 Hb_000795_010 Hb_006692_050--Hb_000795_010 Hb_105480_010 Hb_105480_010 Hb_006692_050--Hb_105480_010 Hb_000005_210 Hb_000005_210 Hb_042026_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_042026_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_042026_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_042026_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_042026_010--Hb_000081_170 Hb_007761_010--Hb_128173_010 Hb_007761_010--Hb_111332_010 Hb_007761_010--Hb_105480_010 Hb_005542_020 Hb_005542_020 Hb_007761_010--Hb_005542_020 Hb_013727_010 Hb_013727_010 Hb_007761_010--Hb_013727_010 Hb_128173_010--Hb_111332_010 Hb_128173_010--Hb_105480_010 Hb_128173_010--Hb_005542_020 Hb_128173_010--Hb_013727_010 Hb_111332_010--Hb_105480_010 Hb_111332_010--Hb_005542_020 Hb_111332_010--Hb_013727_010 Hb_004829_020 Hb_004829_020 Hb_000795_010--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_000795_010--Hb_012340_040 Hb_000795_010--Hb_007761_010 Hb_000795_010--Hb_128173_010 Hb_000795_010--Hb_042026_010 Hb_105480_010--Hb_005542_020 Hb_105480_010--Hb_013727_010 Hb_009268_110 Hb_009268_110 Hb_105480_010--Hb_009268_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.686106 9.75242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis