Hb_005542_020

Information

Type -
Description -
Location Contig5542: 23707-26364
Sequence    

Annotation

kegg
ID rcu:RCOM_0593750
description lupus la ribonucleoprotein, putative
nr
ID XP_002532535.1
description lupus la ribonucleoprotein, putative [Ricinus communis]
swissprot
ID Q94A38
description La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1
trembl
ID B9T2R6
description Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_0593750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_020 0.0 - - lupus la ribonucleoprotein, putative [Ricinus communis]
2 Hb_105480_010 0.0237543057 - - -
3 Hb_111332_010 0.0375235871 - - Dihydroneopterin aldolase [Morus notabilis]
4 Hb_013727_010 0.0455071489 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
5 Hb_128173_010 0.0638166637 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
6 Hb_007761_010 0.0665288001 - - -
7 Hb_009268_110 0.0940336193 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
8 Hb_089491_010 0.0959336415 - - -
9 Hb_136856_010 0.1351740822 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
10 Hb_006692_050 0.1480133409 - - Chloroplastic lipocalin [Theobroma cacao]
11 Hb_021068_020 0.1529685446 - - -
12 Hb_076583_010 0.1611383201 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
13 Hb_009066_010 0.1735544023 - - -
14 Hb_000795_010 0.1739499812 - - -
15 Hb_003636_050 0.1751997367 - - PREDICTED: bark storage protein A-like [Populus euphratica]
16 Hb_068347_020 0.1785762055 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_027394_010 0.1785971837 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_064951_010 0.1977186272 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
19 Hb_000004_140 0.2013675412 - - -
20 Hb_042026_010 0.2066130417 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005542_020 Hb_005542_020 Hb_105480_010 Hb_105480_010 Hb_005542_020--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_005542_020--Hb_111332_010 Hb_013727_010 Hb_013727_010 Hb_005542_020--Hb_013727_010 Hb_128173_010 Hb_128173_010 Hb_005542_020--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_005542_020--Hb_007761_010 Hb_009268_110 Hb_009268_110 Hb_005542_020--Hb_009268_110 Hb_105480_010--Hb_111332_010 Hb_105480_010--Hb_128173_010 Hb_105480_010--Hb_007761_010 Hb_105480_010--Hb_013727_010 Hb_105480_010--Hb_009268_110 Hb_111332_010--Hb_128173_010 Hb_111332_010--Hb_007761_010 Hb_111332_010--Hb_013727_010 Hb_006692_050 Hb_006692_050 Hb_111332_010--Hb_006692_050 Hb_013727_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_013727_010--Hb_089491_010 Hb_136856_010 Hb_136856_010 Hb_013727_010--Hb_136856_010 Hb_128173_010--Hb_007761_010 Hb_128173_010--Hb_006692_050 Hb_128173_010--Hb_013727_010 Hb_007761_010--Hb_006692_050 Hb_007761_010--Hb_013727_010 Hb_009268_110--Hb_089491_010 Hb_009268_110--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_009268_110--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_009268_110--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_009268_110--Hb_068347_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.565134 2.61303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis