Hb_000047_040

Information

Type -
Description -
Location Contig47: 174405-179308
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_012453639.1
description PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105775709

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_210 0.0 - - -
2 Hb_000041_170 0.0 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_000047_040 0.0 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
4 Hb_000072_260 0.0 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
5 Hb_000081_170 0.0 - - -
6 Hb_000088_250 0.0 - - -
7 Hb_000110_220 0.0 - - -
8 Hb_000110_360 0.0 - - -
9 Hb_000111_510 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000122_170 0.0 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
11 Hb_000122_180 0.0 - - -
12 Hb_000130_150 0.0 - - -
13 Hb_000139_020 0.0 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000140_180 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000141_140 0.0 - - PREDICTED: uncharacterized protein LOC104890406 [Beta vulgaris subsp. vulgaris]
16 Hb_000156_050 0.0 - - -
17 Hb_000241_020 0.0 - - -
18 Hb_000249_010 0.0 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
19 Hb_000260_530 0.0 - - PREDICTED: uncharacterized protein LOC105779655 [Gossypium raimondii]
20 Hb_000302_250 0.0 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_210 Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_000005_210--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_000005_210--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_000005_210--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_000005_210--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000005_210--Hb_000088_250 Hb_000110_220 Hb_000110_220 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.034442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis