Hb_000236_270

Information

Type -
Description -
Location Contig236: 230891-232634
Sequence    

Annotation

kegg
ID rcu:RCOM_0523320
description ATP-binding cassette transporter, putative (EC:3.6.3.29)
nr
ID XP_002522797.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q9LK50
description ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2
trembl
ID B9S9X8
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0523320 PE=4 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_270 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_005116_020 0.209471062 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
3 Hb_074152_010 0.2361899216 - - -
4 Hb_013983_010 0.2420337217 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
5 Hb_010603_030 0.2439937607 - - -
6 Hb_029866_010 0.2442561399 - - -
7 Hb_000038_150 0.2484278931 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
8 Hb_134732_010 0.2505141992 - - -
9 Hb_149731_010 0.2535637944 - - -
10 Hb_081636_010 0.2547917235 - - -
11 Hb_000345_480 0.2575973291 - - cyclin-dependent protein kinase, putative [Ricinus communis]
12 Hb_000175_530 0.2587322122 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
13 Hb_002983_100 0.260116069 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
14 Hb_156144_020 0.2654829081 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
15 Hb_011515_030 0.2665038557 - - -
16 Hb_001146_070 0.2686390411 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
17 Hb_179763_010 0.2699407125 - - -
18 Hb_001584_230 0.27020648 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
19 Hb_001125_030 0.2713232001 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004460_020 0.2720110142 - - chaperone protein DNAj, putative [Ricinus communis]

Gene co-expression network

sample Hb_000236_270 Hb_000236_270 Hb_005116_020 Hb_005116_020 Hb_000236_270--Hb_005116_020 Hb_074152_010 Hb_074152_010 Hb_000236_270--Hb_074152_010 Hb_013983_010 Hb_013983_010 Hb_000236_270--Hb_013983_010 Hb_010603_030 Hb_010603_030 Hb_000236_270--Hb_010603_030 Hb_029866_010 Hb_029866_010 Hb_000236_270--Hb_029866_010 Hb_000038_150 Hb_000038_150 Hb_000236_270--Hb_000038_150 Hb_002983_100 Hb_002983_100 Hb_005116_020--Hb_002983_100 Hb_134732_010 Hb_134732_010 Hb_005116_020--Hb_134732_010 Hb_003320_030 Hb_003320_030 Hb_005116_020--Hb_003320_030 Hb_001159_210 Hb_001159_210 Hb_005116_020--Hb_001159_210 Hb_005116_020--Hb_000038_150 Hb_005116_020--Hb_029866_010 Hb_000917_250 Hb_000917_250 Hb_074152_010--Hb_000917_250 Hb_001773_020 Hb_001773_020 Hb_074152_010--Hb_001773_020 Hb_006045_060 Hb_006045_060 Hb_074152_010--Hb_006045_060 Hb_000721_020 Hb_000721_020 Hb_074152_010--Hb_000721_020 Hb_000326_020 Hb_000326_020 Hb_074152_010--Hb_000326_020 Hb_013983_010--Hb_029866_010 Hb_000345_480 Hb_000345_480 Hb_013983_010--Hb_000345_480 Hb_001125_030 Hb_001125_030 Hb_013983_010--Hb_001125_030 Hb_003494_260 Hb_003494_260 Hb_013983_010--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_013983_010--Hb_000153_040 Hb_081636_010 Hb_081636_010 Hb_013983_010--Hb_081636_010 Hb_010603_030--Hb_134732_010 Hb_010603_030--Hb_005116_020 Hb_001951_120 Hb_001951_120 Hb_010603_030--Hb_001951_120 Hb_031073_010 Hb_031073_010 Hb_010603_030--Hb_031073_010 Hb_010603_030--Hb_002983_100 Hb_000088_030 Hb_000088_030 Hb_010603_030--Hb_000088_030 Hb_029866_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_029866_010--Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_029866_010--Hb_059126_010 Hb_029866_010--Hb_000345_480 Hb_029866_010--Hb_081636_010 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_000038_150--Hb_001159_210 Hb_000038_150--Hb_134732_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_004460_020 Hb_004460_020 Hb_000038_150--Hb_004460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174247 0 0 0 0.446324 0.189786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0699961 0 0.0285703 0

CAGE analysis