Hb_000721_020

Information

Type -
Description -
Location Contig721: 5208-6698
Sequence    

Annotation

kegg
ID cic:CICLE_v10004933mg
description hypothetical protein
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000721_020 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_006045_060 0.009149328 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
3 Hb_000326_020 0.1190657473 - - -
4 Hb_032533_010 0.2034688786 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_003687_180 0.2146212237 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
6 Hb_074152_010 0.2458219347 - - -
7 Hb_000917_250 0.2958993746 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
8 Hb_001055_040 0.3056049133 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_010232_010 0.3176874472 - - -
10 Hb_059924_010 0.3269093915 - - -
11 Hb_001541_240 0.3414607576 - - conserved hypothetical protein [Ricinus communis]
12 Hb_040991_010 0.3579743016 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_080083_010 0.3632580689 - - -
14 Hb_001773_020 0.3644856523 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
15 Hb_000457_040 0.3676932221 - - -
16 Hb_004324_020 0.3753305751 - - -
17 Hb_142392_010 0.3851167493 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
18 Hb_008507_050 0.3874159966 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
19 Hb_002163_060 0.3880352523 - - -
20 Hb_002805_320 0.3883277053 - - -

Gene co-expression network

sample Hb_000721_020 Hb_000721_020 Hb_006045_060 Hb_006045_060 Hb_000721_020--Hb_006045_060 Hb_000326_020 Hb_000326_020 Hb_000721_020--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000721_020--Hb_032533_010 Hb_003687_180 Hb_003687_180 Hb_000721_020--Hb_003687_180 Hb_074152_010 Hb_074152_010 Hb_000721_020--Hb_074152_010 Hb_000917_250 Hb_000917_250 Hb_000721_020--Hb_000917_250 Hb_006045_060--Hb_000326_020 Hb_006045_060--Hb_032533_010 Hb_006045_060--Hb_003687_180 Hb_006045_060--Hb_074152_010 Hb_006045_060--Hb_000917_250 Hb_000326_020--Hb_032533_010 Hb_000326_020--Hb_003687_180 Hb_000326_020--Hb_074152_010 Hb_001541_240 Hb_001541_240 Hb_000326_020--Hb_001541_240 Hb_032533_010--Hb_003687_180 Hb_001055_040 Hb_001055_040 Hb_032533_010--Hb_001055_040 Hb_010232_010 Hb_010232_010 Hb_032533_010--Hb_010232_010 Hb_003687_180--Hb_001055_040 Hb_003687_180--Hb_010232_010 Hb_074152_010--Hb_000917_250 Hb_000236_270 Hb_000236_270 Hb_074152_010--Hb_000236_270 Hb_001773_020 Hb_001773_020 Hb_074152_010--Hb_001773_020 Hb_000917_250--Hb_001773_020 Hb_007189_020 Hb_007189_020 Hb_000917_250--Hb_007189_020 Hb_000917_250--Hb_000326_020 Hb_000917_250--Hb_000236_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.058949 0 0 0 0.0848955 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0533294 0 0 0

CAGE analysis