Hb_032533_010

Information

Type -
Description -
Location Contig32533: 26-1201
Sequence    

Annotation

kegg
ID tcc:TCM_023016
description Gag protease polyprotein
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032533_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_003687_180 0.0114297289 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
3 Hb_000721_020 0.2034688786 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_006045_060 0.2123573063 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
5 Hb_000326_020 0.2156117239 - - -
6 Hb_001055_040 0.2158664958 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_010232_010 0.2640887113 - - -
8 Hb_001541_240 0.3387100819 - - conserved hypothetical protein [Ricinus communis]
9 Hb_106496_010 0.339364387 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_000457_040 0.339580286 - - -
11 Hb_001304_100 0.3456790313 - - -
12 Hb_000976_370 0.3630093589 - - beta-glucosidase, putative [Ricinus communis]
13 Hb_120112_010 0.3644856003 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_008689_020 0.3657139912 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001934_020 0.3659728799 - - PREDICTED: uncharacterized protein LOC105178413 [Sesamum indicum]
16 Hb_074152_010 0.3772181909 - - -
17 Hb_008221_120 0.4011946158 - - PREDICTED: GDSL esterase/lipase At5g63170-like [Jatropha curcas]
18 Hb_000853_380 0.4042502237 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004696_050 0.4056845159 - - -
20 Hb_007849_030 0.4105426445 - - l-allo-threonine aldolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032533_010 Hb_032533_010 Hb_003687_180 Hb_003687_180 Hb_032533_010--Hb_003687_180 Hb_000721_020 Hb_000721_020 Hb_032533_010--Hb_000721_020 Hb_006045_060 Hb_006045_060 Hb_032533_010--Hb_006045_060 Hb_000326_020 Hb_000326_020 Hb_032533_010--Hb_000326_020 Hb_001055_040 Hb_001055_040 Hb_032533_010--Hb_001055_040 Hb_010232_010 Hb_010232_010 Hb_032533_010--Hb_010232_010 Hb_003687_180--Hb_001055_040 Hb_003687_180--Hb_000721_020 Hb_003687_180--Hb_006045_060 Hb_003687_180--Hb_000326_020 Hb_003687_180--Hb_010232_010 Hb_000721_020--Hb_006045_060 Hb_000721_020--Hb_000326_020 Hb_074152_010 Hb_074152_010 Hb_000721_020--Hb_074152_010 Hb_000917_250 Hb_000917_250 Hb_000721_020--Hb_000917_250 Hb_006045_060--Hb_000326_020 Hb_006045_060--Hb_074152_010 Hb_006045_060--Hb_000917_250 Hb_000326_020--Hb_074152_010 Hb_001541_240 Hb_001541_240 Hb_000326_020--Hb_001541_240 Hb_001902_020 Hb_001902_020 Hb_001055_040--Hb_001902_020 Hb_000926_220 Hb_000926_220 Hb_001055_040--Hb_000926_220 Hb_017836_010 Hb_017836_010 Hb_001055_040--Hb_017836_010 Hb_001055_040--Hb_000721_020 Hb_010232_010--Hb_001541_240 Hb_010232_010--Hb_001055_040 Hb_010232_010--Hb_000721_020 Hb_010232_010--Hb_006045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0396722 0 0 0 0.0198929 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0356824 0 0 0

CAGE analysis