Hb_001541_240

Information

Type -
Description -
Location Contig1541: 229418-229891
Sequence    

Annotation

kegg
ID rcu:RCOM_0793520
description hypothetical protein
nr
ID XP_002530030.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GW38
description RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1
trembl
ID B9SVL1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793520 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13301: 229458-229940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000326_020 0.2724225893 - - -
3 Hb_010232_010 0.2726190615 - - -
4 Hb_032533_010 0.3387100819 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_000721_020 0.3414607576 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
6 Hb_003687_180 0.3421851478 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
7 Hb_006045_060 0.3432007221 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
8 Hb_003812_010 0.3641087873 - - -
9 Hb_012656_010 0.3642823416 - - -
10 Hb_001263_020 0.3643194922 - - -
11 Hb_000487_390 0.3645035538 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
12 Hb_001754_220 0.367082209 - - -
13 Hb_001304_100 0.3763366279 - - -
14 Hb_000853_380 0.3775690819 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019654_160 0.3796494944 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_012799_090 0.3800333536 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
17 Hb_000866_160 0.3902924553 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
18 Hb_031089_060 0.3908201381 - - -
19 Hb_001935_210 0.39553553 - - -
20 Hb_092820_010 0.3957459345 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]

Gene co-expression network

sample Hb_001541_240 Hb_001541_240 Hb_000326_020 Hb_000326_020 Hb_001541_240--Hb_000326_020 Hb_010232_010 Hb_010232_010 Hb_001541_240--Hb_010232_010 Hb_032533_010 Hb_032533_010 Hb_001541_240--Hb_032533_010 Hb_000721_020 Hb_000721_020 Hb_001541_240--Hb_000721_020 Hb_003687_180 Hb_003687_180 Hb_001541_240--Hb_003687_180 Hb_006045_060 Hb_006045_060 Hb_001541_240--Hb_006045_060 Hb_000326_020--Hb_000721_020 Hb_000326_020--Hb_006045_060 Hb_000326_020--Hb_032533_010 Hb_000326_020--Hb_003687_180 Hb_074152_010 Hb_074152_010 Hb_000326_020--Hb_074152_010 Hb_010232_010--Hb_032533_010 Hb_010232_010--Hb_003687_180 Hb_001055_040 Hb_001055_040 Hb_010232_010--Hb_001055_040 Hb_010232_010--Hb_000721_020 Hb_010232_010--Hb_006045_060 Hb_032533_010--Hb_003687_180 Hb_032533_010--Hb_000721_020 Hb_032533_010--Hb_006045_060 Hb_032533_010--Hb_001055_040 Hb_000721_020--Hb_006045_060 Hb_000721_020--Hb_003687_180 Hb_000721_020--Hb_074152_010 Hb_000917_250 Hb_000917_250 Hb_000721_020--Hb_000917_250 Hb_003687_180--Hb_001055_040 Hb_003687_180--Hb_006045_060 Hb_006045_060--Hb_074152_010 Hb_006045_060--Hb_000917_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0624969 0 0 0 0.117641 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.230525 0 0.0481757 0

CAGE analysis