Hb_000917_250

Information

Type -
Description -
Location Contig917: 256815-264122
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11460g
description POPTRDRAFT_564483; hypothetical protein
nr
ID XP_011021544.1
description PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
swissprot
ID Q5EA37
description Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1
trembl
ID B9HIY1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_250 0.0 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
2 Hb_074152_010 0.1159390359 - - -
3 Hb_001773_020 0.2337133334 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
4 Hb_007189_020 0.262600224 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_000326_020 0.2781390757 - - -
6 Hb_006045_060 0.2907209152 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
7 Hb_000236_270 0.2936934871 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_000721_020 0.2958993746 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_000181_040 0.3201688317 transcription factor TF Family: NAC PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
10 Hb_149731_010 0.3304824464 - - -
11 Hb_031089_060 0.3406025165 - - -
12 Hb_000866_160 0.3411997025 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
13 Hb_002701_130 0.3441231693 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
14 Hb_005116_020 0.3521396447 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
15 Hb_000976_180 0.3560769796 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
16 Hb_006846_100 0.3561549058 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
17 Hb_011515_030 0.357853764 - - -
18 Hb_000563_220 0.3596036329 - - hypothetical protein VITISV_004111 [Vitis vinifera]
19 Hb_000115_170 0.3709095604 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
20 Hb_000330_180 0.3731878941 - - -

Gene co-expression network

sample Hb_000917_250 Hb_000917_250 Hb_074152_010 Hb_074152_010 Hb_000917_250--Hb_074152_010 Hb_001773_020 Hb_001773_020 Hb_000917_250--Hb_001773_020 Hb_007189_020 Hb_007189_020 Hb_000917_250--Hb_007189_020 Hb_000326_020 Hb_000326_020 Hb_000917_250--Hb_000326_020 Hb_006045_060 Hb_006045_060 Hb_000917_250--Hb_006045_060 Hb_000236_270 Hb_000236_270 Hb_000917_250--Hb_000236_270 Hb_074152_010--Hb_000236_270 Hb_074152_010--Hb_001773_020 Hb_074152_010--Hb_006045_060 Hb_000721_020 Hb_000721_020 Hb_074152_010--Hb_000721_020 Hb_074152_010--Hb_000326_020 Hb_001769_020 Hb_001769_020 Hb_001773_020--Hb_001769_020 Hb_080083_010 Hb_080083_010 Hb_001773_020--Hb_080083_010 Hb_002701_130 Hb_002701_130 Hb_001773_020--Hb_002701_130 Hb_011515_030 Hb_011515_030 Hb_001773_020--Hb_011515_030 Hb_000330_180 Hb_000330_180 Hb_007189_020--Hb_000330_180 Hb_000181_040 Hb_000181_040 Hb_007189_020--Hb_000181_040 Hb_155932_010 Hb_155932_010 Hb_007189_020--Hb_155932_010 Hb_031089_060 Hb_031089_060 Hb_007189_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_007189_020--Hb_000866_160 Hb_000326_020--Hb_000721_020 Hb_000326_020--Hb_006045_060 Hb_032533_010 Hb_032533_010 Hb_000326_020--Hb_032533_010 Hb_003687_180 Hb_003687_180 Hb_000326_020--Hb_003687_180 Hb_001541_240 Hb_001541_240 Hb_000326_020--Hb_001541_240 Hb_006045_060--Hb_000721_020 Hb_006045_060--Hb_032533_010 Hb_006045_060--Hb_003687_180 Hb_005116_020 Hb_005116_020 Hb_000236_270--Hb_005116_020 Hb_013983_010 Hb_013983_010 Hb_000236_270--Hb_013983_010 Hb_010603_030 Hb_010603_030 Hb_000236_270--Hb_010603_030 Hb_029866_010 Hb_029866_010 Hb_000236_270--Hb_029866_010 Hb_000038_150 Hb_000038_150 Hb_000236_270--Hb_000038_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0399803 0 0 0 0.230056 0.0351769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.107889 0 0 0

CAGE analysis