Hb_007524_050

Information

Type -
Description -
Location Contig7524: 74170-74860
Sequence    

Annotation

kegg
ID cam:101497478
description uncharacterized LOC101497478
nr
ID XP_009618737.1
description PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1AZY6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007524_050 0.0 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
2 Hb_000788_050 0.1979434387 - - Chloride channel protein CLC-c [Populus trichocarpa]
3 Hb_156635_050 0.3200855832 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_002391_090 0.3248718933 - - PREDICTED: IST1-like protein [Jatropha curcas]
5 Hb_012094_030 0.3654286932 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
6 Hb_005489_010 0.3662996901 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
7 Hb_003554_020 0.3742994865 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
8 Hb_001247_190 0.3784029582 - - unnamed protein product [Vitis vinifera]
9 Hb_001517_040 0.3815828744 - - -
10 Hb_000668_020 0.3851989411 - - -
11 Hb_006065_040 0.3866094516 - - -
12 Hb_030784_010 0.3870457629 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
13 Hb_000157_080 0.3890624326 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
14 Hb_002379_040 0.3960136474 - - -
15 Hb_007534_020 0.396915163 - - -
16 Hb_001017_060 0.3969829388 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
17 Hb_000640_110 0.398826174 - - -
18 Hb_001565_030 0.4006948002 - - -
19 Hb_005928_090 0.401166312 - - PREDICTED: magnesium transporter MRS2-I-like isoform X3 [Jatropha curcas]
20 Hb_172921_010 0.4012707978 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_007524_050 Hb_007524_050 Hb_000788_050 Hb_000788_050 Hb_007524_050--Hb_000788_050 Hb_156635_050 Hb_156635_050 Hb_007524_050--Hb_156635_050 Hb_002391_090 Hb_002391_090 Hb_007524_050--Hb_002391_090 Hb_012094_030 Hb_012094_030 Hb_007524_050--Hb_012094_030 Hb_005489_010 Hb_005489_010 Hb_007524_050--Hb_005489_010 Hb_003554_020 Hb_003554_020 Hb_007524_050--Hb_003554_020 Hb_030784_010 Hb_030784_010 Hb_000788_050--Hb_030784_010 Hb_005928_090 Hb_005928_090 Hb_000788_050--Hb_005928_090 Hb_172921_010 Hb_172921_010 Hb_000788_050--Hb_172921_010 Hb_000788_050--Hb_002391_090 Hb_002379_040 Hb_002379_040 Hb_000788_050--Hb_002379_040 Hb_000330_180 Hb_000330_180 Hb_156635_050--Hb_000330_180 Hb_156635_050--Hb_003554_020 Hb_007189_020 Hb_007189_020 Hb_156635_050--Hb_007189_020 Hb_001221_010 Hb_001221_010 Hb_156635_050--Hb_001221_010 Hb_000181_040 Hb_000181_040 Hb_156635_050--Hb_000181_040 Hb_151939_010 Hb_151939_010 Hb_002391_090--Hb_151939_010 Hb_150766_020 Hb_150766_020 Hb_002391_090--Hb_150766_020 Hb_073799_010 Hb_073799_010 Hb_002391_090--Hb_073799_010 Hb_004242_210 Hb_004242_210 Hb_002391_090--Hb_004242_210 Hb_006065_040 Hb_006065_040 Hb_012094_030--Hb_006065_040 Hb_071079_050 Hb_071079_050 Hb_012094_030--Hb_071079_050 Hb_069868_010 Hb_069868_010 Hb_012094_030--Hb_069868_010 Hb_003695_010 Hb_003695_010 Hb_012094_030--Hb_003695_010 Hb_000252_140 Hb_000252_140 Hb_012094_030--Hb_000252_140 Hb_143800_010 Hb_143800_010 Hb_012094_030--Hb_143800_010 Hb_002025_210 Hb_002025_210 Hb_005489_010--Hb_002025_210 Hb_002344_120 Hb_002344_120 Hb_005489_010--Hb_002344_120 Hb_000665_110 Hb_000665_110 Hb_005489_010--Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_005489_010--Hb_000562_060 Hb_005489_010--Hb_150766_020 Hb_001233_020 Hb_001233_020 Hb_005489_010--Hb_001233_020 Hb_001377_390 Hb_001377_390 Hb_003554_020--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_003554_020--Hb_014556_020 Hb_003554_020--Hb_000252_140 Hb_000359_240 Hb_000359_240 Hb_003554_020--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_003554_020--Hb_062135_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.259099 0.108743 0.19755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.400968 0 0.0885774 0

CAGE analysis