Hb_030784_010

Information

Type -
Description -
Location Contig30784: 1825-2670
Sequence    

Annotation

kegg
ID rcu:RCOM_1383570
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002522129.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID B9S813
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_1383570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030784_010 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_005928_090 0.2160886099 - - PREDICTED: magnesium transporter MRS2-I-like isoform X3 [Jatropha curcas]
3 Hb_000788_050 0.2909976013 - - Chloride channel protein CLC-c [Populus trichocarpa]
4 Hb_001488_310 0.2922381349 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
5 Hb_011287_040 0.3160500957 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
6 Hb_002391_090 0.3290920305 - - PREDICTED: IST1-like protein [Jatropha curcas]
7 Hb_073799_010 0.3351749272 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013394_100 0.3404379837 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
9 Hb_053345_010 0.3424927702 - - -
10 Hb_182713_020 0.3435487082 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
11 Hb_002379_040 0.3461174229 - - -
12 Hb_052640_010 0.3500488142 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
13 Hb_004531_180 0.3525966635 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000522_140 0.3526932502 - - protein transporter, putative [Ricinus communis]
15 Hb_004525_080 0.3528705929 - - Sugar transporter ERD6-like 6 [Morus notabilis]
16 Hb_021888_040 0.3533922818 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
17 Hb_172921_010 0.3536949868 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
18 Hb_000946_160 0.3545533112 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
19 Hb_008185_020 0.3590754743 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
20 Hb_002609_250 0.3591688794 - - PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_030784_010 Hb_030784_010 Hb_005928_090 Hb_005928_090 Hb_030784_010--Hb_005928_090 Hb_000788_050 Hb_000788_050 Hb_030784_010--Hb_000788_050 Hb_001488_310 Hb_001488_310 Hb_030784_010--Hb_001488_310 Hb_011287_040 Hb_011287_040 Hb_030784_010--Hb_011287_040 Hb_002391_090 Hb_002391_090 Hb_030784_010--Hb_002391_090 Hb_073799_010 Hb_073799_010 Hb_030784_010--Hb_073799_010 Hb_002379_040 Hb_002379_040 Hb_005928_090--Hb_002379_040 Hb_005928_090--Hb_000788_050 Hb_003077_120 Hb_003077_120 Hb_005928_090--Hb_003077_120 Hb_005928_090--Hb_001488_310 Hb_000522_140 Hb_000522_140 Hb_005928_090--Hb_000522_140 Hb_007524_050 Hb_007524_050 Hb_000788_050--Hb_007524_050 Hb_172921_010 Hb_172921_010 Hb_000788_050--Hb_172921_010 Hb_000788_050--Hb_002391_090 Hb_000788_050--Hb_002379_040 Hb_053345_010 Hb_053345_010 Hb_001488_310--Hb_053345_010 Hb_001488_310--Hb_073799_010 Hb_128473_010 Hb_128473_010 Hb_001488_310--Hb_128473_010 Hb_013394_100 Hb_013394_100 Hb_001488_310--Hb_013394_100 Hb_001488_310--Hb_011287_040 Hb_182713_020 Hb_182713_020 Hb_011287_040--Hb_182713_020 Hb_001518_070 Hb_001518_070 Hb_011287_040--Hb_001518_070 Hb_008185_020 Hb_008185_020 Hb_011287_040--Hb_008185_020 Hb_000053_030 Hb_000053_030 Hb_011287_040--Hb_000053_030 Hb_011287_040--Hb_073799_010 Hb_011287_040--Hb_013394_100 Hb_151939_010 Hb_151939_010 Hb_002391_090--Hb_151939_010 Hb_150766_020 Hb_150766_020 Hb_002391_090--Hb_150766_020 Hb_002391_090--Hb_073799_010 Hb_002391_090--Hb_007524_050 Hb_004242_210 Hb_004242_210 Hb_002391_090--Hb_004242_210 Hb_002388_010 Hb_002388_010 Hb_073799_010--Hb_002388_010 Hb_073799_010--Hb_182713_020 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_073799_010--Hb_128473_010 Hb_073799_010--Hb_013394_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027287 0 0.0639669 0.656345 0.208329 0.192928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.197225 0 0 0

CAGE analysis