Hb_000788_050

Information

Type -
Description -
Location Contig788: 54354-58406
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00940g
description Chloride channel protein CLC-c
nr
ID XP_006385193.1
description Chloride channel protein CLC-c [Populus trichocarpa]
swissprot
ID Q96282
description Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1
trembl
ID U5GHL4
description Chloride channel protein OS=Populus trichocarpa GN=POPTR_0003s00940g PE=3 SV=1
Gene Ontology
ID GO:0016021
description chloride channel protein clc-c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_050 0.0 - - Chloride channel protein CLC-c [Populus trichocarpa]
2 Hb_007524_050 0.1979434387 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
3 Hb_030784_010 0.2909976013 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_005928_090 0.296893942 - - PREDICTED: magnesium transporter MRS2-I-like isoform X3 [Jatropha curcas]
5 Hb_172921_010 0.3128824988 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
6 Hb_002391_090 0.3129281685 - - PREDICTED: IST1-like protein [Jatropha curcas]
7 Hb_002379_040 0.331313286 - - -
8 Hb_001247_190 0.336368115 - - unnamed protein product [Vitis vinifera]
9 Hb_000668_020 0.3408386413 - - -
10 Hb_001633_190 0.3416911976 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
11 Hb_005489_010 0.3427188161 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
12 Hb_000640_110 0.3449904551 - - -
13 Hb_005597_010 0.3490484941 - - -
14 Hb_099298_010 0.3494352409 - - -
15 Hb_021888_040 0.3590364349 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
16 Hb_000350_040 0.3593151036 - - -
17 Hb_002016_030 0.3605103706 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000789_150 0.3606433473 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
19 Hb_000953_120 0.3616467836 - - -
20 Hb_182713_020 0.3629728149 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]

Gene co-expression network

sample Hb_000788_050 Hb_000788_050 Hb_007524_050 Hb_007524_050 Hb_000788_050--Hb_007524_050 Hb_030784_010 Hb_030784_010 Hb_000788_050--Hb_030784_010 Hb_005928_090 Hb_005928_090 Hb_000788_050--Hb_005928_090 Hb_172921_010 Hb_172921_010 Hb_000788_050--Hb_172921_010 Hb_002391_090 Hb_002391_090 Hb_000788_050--Hb_002391_090 Hb_002379_040 Hb_002379_040 Hb_000788_050--Hb_002379_040 Hb_156635_050 Hb_156635_050 Hb_007524_050--Hb_156635_050 Hb_007524_050--Hb_002391_090 Hb_012094_030 Hb_012094_030 Hb_007524_050--Hb_012094_030 Hb_005489_010 Hb_005489_010 Hb_007524_050--Hb_005489_010 Hb_003554_020 Hb_003554_020 Hb_007524_050--Hb_003554_020 Hb_030784_010--Hb_005928_090 Hb_001488_310 Hb_001488_310 Hb_030784_010--Hb_001488_310 Hb_011287_040 Hb_011287_040 Hb_030784_010--Hb_011287_040 Hb_030784_010--Hb_002391_090 Hb_073799_010 Hb_073799_010 Hb_030784_010--Hb_073799_010 Hb_005928_090--Hb_002379_040 Hb_003077_120 Hb_003077_120 Hb_005928_090--Hb_003077_120 Hb_005928_090--Hb_001488_310 Hb_000522_140 Hb_000522_140 Hb_005928_090--Hb_000522_140 Hb_001085_140 Hb_001085_140 Hb_172921_010--Hb_001085_140 Hb_002016_030 Hb_002016_030 Hb_172921_010--Hb_002016_030 Hb_021888_040 Hb_021888_040 Hb_172921_010--Hb_021888_040 Hb_002079_020 Hb_002079_020 Hb_172921_010--Hb_002079_020 Hb_172921_010--Hb_002379_040 Hb_000350_040 Hb_000350_040 Hb_172921_010--Hb_000350_040 Hb_151939_010 Hb_151939_010 Hb_002391_090--Hb_151939_010 Hb_150766_020 Hb_150766_020 Hb_002391_090--Hb_150766_020 Hb_002391_090--Hb_073799_010 Hb_004242_210 Hb_004242_210 Hb_002391_090--Hb_004242_210 Hb_002379_040--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_002379_040--Hb_011200_010 Hb_059978_010 Hb_059978_010 Hb_002379_040--Hb_059978_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_003551_010 Hb_003551_010 Hb_002379_040--Hb_003551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0484634 0.0117134 0.0233316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0224032 0 0.00893307 0

CAGE analysis