Hb_000522_140

Information

Type -
Description -
Location Contig522: 91423-93723
Sequence    

Annotation

kegg
ID rcu:RCOM_0492420
description protein transporter, putative
nr
ID XP_002529314.1
description protein transporter, putative [Ricinus communis]
swissprot
ID Q94CG2
description Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4
trembl
ID B9STJ5
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0492420 PE=4 SV=1
Gene Ontology
ID GO:0005737
description bet1-like snare 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46845: 91839-93311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_140 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_000850_040 0.2379318127 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000099_210 0.2446558047 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
4 Hb_000136_130 0.2468523663 - - PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
5 Hb_002235_130 0.2620934509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002265_030 0.2629922654 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
7 Hb_010964_020 0.2635708312 - - RNA helicase [Arabidopsis thaliana]
8 Hb_145655_010 0.2675524837 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
9 Hb_001450_100 0.2707993859 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
10 Hb_095831_010 0.2708220834 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
11 Hb_000215_260 0.2717678083 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
12 Hb_128496_010 0.2736059782 - - unnamed protein product [Vitis vinifera]
13 Hb_142751_010 0.2749781371 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000258_290 0.275098909 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
15 Hb_053971_010 0.2753241328 - - -
16 Hb_000329_420 0.2782679509 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
17 Hb_000207_100 0.2814102393 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
18 Hb_086022_010 0.2820826576 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
19 Hb_000281_060 0.2838386013 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_089971_010 0.2842157596 - - PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]

Gene co-expression network

sample Hb_000522_140 Hb_000522_140 Hb_000850_040 Hb_000850_040 Hb_000522_140--Hb_000850_040 Hb_000099_210 Hb_000099_210 Hb_000522_140--Hb_000099_210 Hb_000136_130 Hb_000136_130 Hb_000522_140--Hb_000136_130 Hb_002235_130 Hb_002235_130 Hb_000522_140--Hb_002235_130 Hb_002265_030 Hb_002265_030 Hb_000522_140--Hb_002265_030 Hb_010964_020 Hb_010964_020 Hb_000522_140--Hb_010964_020 Hb_183557_010 Hb_183557_010 Hb_000850_040--Hb_183557_010 Hb_003633_040 Hb_003633_040 Hb_000850_040--Hb_003633_040 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_004718_040 Hb_004718_040 Hb_000850_040--Hb_004718_040 Hb_106411_010 Hb_106411_010 Hb_000850_040--Hb_106411_010 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100 Hb_168973_010 Hb_168973_010 Hb_000136_130--Hb_168973_010 Hb_000074_060 Hb_000074_060 Hb_000136_130--Hb_000074_060 Hb_000136_130--Hb_000850_040 Hb_000136_130--Hb_004718_040 Hb_002122_010 Hb_002122_010 Hb_000136_130--Hb_002122_010 Hb_001623_290 Hb_001623_290 Hb_000136_130--Hb_001623_290 Hb_018954_020 Hb_018954_020 Hb_002235_130--Hb_018954_020 Hb_002235_130--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_002235_130--Hb_000497_230 Hb_003376_050 Hb_003376_050 Hb_002235_130--Hb_003376_050 Hb_005271_080 Hb_005271_080 Hb_002235_130--Hb_005271_080 Hb_001279_330 Hb_001279_330 Hb_002235_130--Hb_001279_330 Hb_005054_050 Hb_005054_050 Hb_002265_030--Hb_005054_050 Hb_000329_420 Hb_000329_420 Hb_002265_030--Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_002265_030--Hb_000215_260 Hb_004324_240 Hb_004324_240 Hb_002265_030--Hb_004324_240 Hb_001450_100 Hb_001450_100 Hb_002265_030--Hb_001450_100 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87517 0 0.623266 3.44996 1.94799 2.65573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.856656 0.695564 0.242591 0.254935

CAGE analysis