Hb_183557_010

Information

Type -
Description -
Location Contig183557: 1609-1830
Sequence    

Annotation

kegg
ID rcu:RCOM_1004060
description hypothetical protein
nr
ID KDP40848.1
description hypothetical protein JCGZ_24847 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24847 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183557_010 0.0 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
2 Hb_000850_040 0.1407319592 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003536_110 0.1464909082 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
4 Hb_106411_010 0.1493050941 - - Ribosomal protein S25 family protein [Theobroma cacao]
5 Hb_076875_020 0.1499652446 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
6 Hb_002192_090 0.1574128228 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
7 Hb_001124_020 0.1590246945 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
8 Hb_002007_180 0.1616099787 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
9 Hb_000080_060 0.1701658964 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
10 Hb_005367_010 0.1702604927 - - -
11 Hb_004718_040 0.1704748517 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
12 Hb_000074_060 0.171725848 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
13 Hb_001699_100 0.1732093354 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
14 Hb_133724_010 0.1747368598 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000676_080 0.1749396849 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
16 Hb_000136_180 0.1751216129 - - ribosomal protein S28, putative [Ricinus communis]
17 Hb_000342_160 0.1757671269 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
18 Hb_004195_080 0.1761917 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
19 Hb_003925_070 0.1764200367 - - ATOZI1, putative [Ricinus communis]
20 Hb_002508_010 0.1767456567 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]

Gene co-expression network

sample Hb_183557_010 Hb_183557_010 Hb_000850_040 Hb_000850_040 Hb_183557_010--Hb_000850_040 Hb_003536_110 Hb_003536_110 Hb_183557_010--Hb_003536_110 Hb_106411_010 Hb_106411_010 Hb_183557_010--Hb_106411_010 Hb_076875_020 Hb_076875_020 Hb_183557_010--Hb_076875_020 Hb_002192_090 Hb_002192_090 Hb_183557_010--Hb_002192_090 Hb_001124_020 Hb_001124_020 Hb_183557_010--Hb_001124_020 Hb_003633_040 Hb_003633_040 Hb_000850_040--Hb_003633_040 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_004718_040 Hb_004718_040 Hb_000850_040--Hb_004718_040 Hb_000850_040--Hb_106411_010 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_000473_020 Hb_000473_020 Hb_003536_110--Hb_000473_020 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_000025_050 Hb_000025_050 Hb_106411_010--Hb_000025_050 Hb_076874_010 Hb_076874_010 Hb_106411_010--Hb_076874_010 Hb_003925_070 Hb_003925_070 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_152554_010 Hb_152554_010 Hb_076875_020--Hb_152554_010 Hb_000812_040 Hb_000812_040 Hb_076875_020--Hb_000812_040 Hb_001135_140 Hb_001135_140 Hb_076875_020--Hb_001135_140 Hb_038237_010 Hb_038237_010 Hb_076875_020--Hb_038237_010 Hb_007188_020 Hb_007188_020 Hb_076875_020--Hb_007188_020 Hb_133724_010 Hb_133724_010 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002388_010 Hb_002388_010 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050 Hb_012796_020 Hb_012796_020 Hb_001124_020--Hb_012796_020 Hb_082821_010 Hb_082821_010 Hb_001124_020--Hb_082821_010 Hb_001699_100 Hb_001699_100 Hb_001124_020--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_001124_020--Hb_001633_130 Hb_001575_070 Hb_001575_070 Hb_001124_020--Hb_001575_070 Hb_004466_040 Hb_004466_040 Hb_001124_020--Hb_004466_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.912 35.8813 43.3821 127.588 50.2292 149.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4907 125.734 33.5599 22.7838 22.324

CAGE analysis