Hb_000099_210

Information

Type -
Description -
Location Contig99: 234105-235915
Sequence    

Annotation

kegg
ID rcu:RCOM_1689390
description 50S ribosomal protein L25, putative
nr
ID XP_012086805.1
description PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
swissprot
ID Q5FRT8
description 50S ribosomal protein L25 OS=Gluconobacter oxydans (strain 621H) GN=rplY PE=3 SV=1
trembl
ID A0A067K0P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20520 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_210 0.0 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
2 Hb_007603_010 0.1896488129 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008406_140 0.2141402083 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_005976_050 0.2155561849 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
5 Hb_000031_150 0.2185990522 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_002102_030 0.2197545317 - - -
7 Hb_007810_100 0.2222080359 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
8 Hb_000258_290 0.2227201489 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
9 Hb_002111_060 0.2258582073 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
10 Hb_002687_040 0.226101728 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
11 Hb_148909_010 0.2265403864 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
12 Hb_078477_050 0.2267228111 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
13 Hb_000465_120 0.2300261657 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
14 Hb_165350_010 0.230087395 - - unnamed protein product [Triticum aestivum]
15 Hb_001247_170 0.230489012 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
16 Hb_000592_080 0.2305243178 - - PREDICTED: thymidylate kinase [Jatropha curcas]
17 Hb_001450_100 0.2324942733 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
18 Hb_005803_010 0.2327795848 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000850_040 0.2333242689 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000497_230 0.2333849501 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_210 Hb_000099_210 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000197_210 Hb_000197_210 Hb_008406_140--Hb_000197_210 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_001279_330 Hb_001279_330 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_002159_040 Hb_002159_040 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_002811_060 Hb_002811_060 Hb_000031_150--Hb_002811_060 Hb_000031_150--Hb_000933_060 Hb_001047_030 Hb_001047_030 Hb_000031_150--Hb_001047_030 Hb_004306_080 Hb_004306_080 Hb_000031_150--Hb_004306_080 Hb_003050_390 Hb_003050_390 Hb_000031_150--Hb_003050_390 Hb_001691_120 Hb_001691_120 Hb_000031_150--Hb_001691_120 Hb_000035_200 Hb_000035_200 Hb_002102_030--Hb_000035_200 Hb_001767_130 Hb_001767_130 Hb_002102_030--Hb_001767_130 Hb_000270_520 Hb_000270_520 Hb_002102_030--Hb_000270_520 Hb_131035_010 Hb_131035_010 Hb_002102_030--Hb_131035_010 Hb_000270_510 Hb_000270_510 Hb_002102_030--Hb_000270_510 Hb_002102_030--Hb_003050_390 Hb_007810_100--Hb_000850_050 Hb_007810_100--Hb_018954_020 Hb_007810_100--Hb_000197_210 Hb_007810_100--Hb_002159_040 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73605 0.280346 0.451528 1.34577 1.74478 1.52053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.412288 1.05065 0.813085 0.19328

CAGE analysis