Hb_007904_080

Information

Type -
Description -
Location Contig7904: 49153-53849
Sequence    

Annotation

kegg
ID tcc:TCM_010682
description Uncharacterized protein isoform 1
nr
ID KDP26722.1
description hypothetical protein JCGZ_17880 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58316: 52330-53142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_080 0.0 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
2 Hb_141547_010 0.1047470158 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
3 Hb_000342_090 0.1111356188 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
4 Hb_111985_080 0.1111933881 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
5 Hb_002105_080 0.1123744053 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_006816_300 0.1129094735 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_007849_020 0.1142782029 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
8 Hb_133047_010 0.1158070819 - - xanthine dehydrogenase, putative [Ricinus communis]
9 Hb_000313_340 0.1168904827 - - DNA repair protein xp-E, putative [Ricinus communis]
10 Hb_010578_060 0.1168983096 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
11 Hb_000227_380 0.1180273435 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
12 Hb_007101_180 0.1183639575 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
13 Hb_002471_210 0.1189211064 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
14 Hb_057451_010 0.1219771195 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
15 Hb_000023_060 0.1229485494 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
16 Hb_002400_240 0.1234772611 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
17 Hb_000107_530 0.1237577782 - - calcium-dependent protein kinase, putative [Ricinus communis]
18 Hb_000465_480 0.1241412481 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
19 Hb_000250_070 0.1242826868 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
20 Hb_017075_010 0.1248280668 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_080 Hb_007904_080 Hb_141547_010 Hb_141547_010 Hb_007904_080--Hb_141547_010 Hb_000342_090 Hb_000342_090 Hb_007904_080--Hb_000342_090 Hb_111985_080 Hb_111985_080 Hb_007904_080--Hb_111985_080 Hb_002105_080 Hb_002105_080 Hb_007904_080--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_007904_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_007904_080--Hb_007849_020 Hb_000997_030 Hb_000997_030 Hb_141547_010--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_141547_010--Hb_000023_060 Hb_001900_110 Hb_001900_110 Hb_141547_010--Hb_001900_110 Hb_002400_240 Hb_002400_240 Hb_141547_010--Hb_002400_240 Hb_141547_010--Hb_006816_300 Hb_002762_130 Hb_002762_130 Hb_141547_010--Hb_002762_130 Hb_000342_090--Hb_007849_020 Hb_125092_020 Hb_125092_020 Hb_000342_090--Hb_125092_020 Hb_000227_380 Hb_000227_380 Hb_000342_090--Hb_000227_380 Hb_000342_090--Hb_000023_060 Hb_000417_160 Hb_000417_160 Hb_000342_090--Hb_000417_160 Hb_000342_090--Hb_006816_300 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_148909_030 Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_002301_080 Hb_002301_080 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_002105_080--Hb_006816_300 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_006816_300--Hb_007849_020 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55207 2.41638 0.571762 0.524193 2.76961 2.98099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292228 0.450744 1.67682 1.41775 0.925551

CAGE analysis