Hb_000041_020

Information

Type -
Description -
Location Contig41: 30062-32122
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11640g
description POPTRDRAFT_767466; hypothetical protein
nr
ID XP_002313059.2
description hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
swissprot
ID Q9LHN5
description Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1
trembl
ID B9HRQ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11640g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_020 0.0 - - hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
2 Hb_001437_180 0.1023559078 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
3 Hb_002636_050 0.1174274087 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
4 Hb_001484_120 0.1184970664 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
5 Hb_001771_130 0.1193207003 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
6 Hb_000009_210 0.1197132264 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
7 Hb_027450_010 0.1260805596 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
8 Hb_000627_080 0.1292692737 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_004137_060 0.1304682811 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
10 Hb_000390_070 0.1340074315 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
11 Hb_003216_080 0.1363680335 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
12 Hb_001322_210 0.1384243852 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
13 Hb_027402_140 0.1388632986 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
14 Hb_025012_010 0.1394062239 - - PREDICTED: importin-4 [Vitis vinifera]
15 Hb_067345_010 0.1401568353 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_004619_050 0.1407136345 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
17 Hb_005914_150 0.1407286053 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
18 Hb_004452_010 0.143269148 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
19 Hb_008085_010 0.1433401369 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
20 Hb_000878_010 0.1435119146 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000041_020 Hb_000041_020 Hb_001437_180 Hb_001437_180 Hb_000041_020--Hb_001437_180 Hb_002636_050 Hb_002636_050 Hb_000041_020--Hb_002636_050 Hb_001484_120 Hb_001484_120 Hb_000041_020--Hb_001484_120 Hb_001771_130 Hb_001771_130 Hb_000041_020--Hb_001771_130 Hb_000009_210 Hb_000009_210 Hb_000041_020--Hb_000009_210 Hb_027450_010 Hb_027450_010 Hb_000041_020--Hb_027450_010 Hb_001437_180--Hb_002636_050 Hb_004734_060 Hb_004734_060 Hb_001437_180--Hb_004734_060 Hb_001437_180--Hb_001771_130 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_000386_030 Hb_000386_030 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_004452_010 Hb_004452_010 Hb_002636_050--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_001584_150 Hb_001584_150 Hb_002636_050--Hb_001584_150 Hb_067345_010 Hb_067345_010 Hb_001484_120--Hb_067345_010 Hb_002805_070 Hb_002805_070 Hb_001484_120--Hb_002805_070 Hb_000048_140 Hb_000048_140 Hb_001484_120--Hb_000048_140 Hb_002196_020 Hb_002196_020 Hb_001484_120--Hb_002196_020 Hb_005883_050 Hb_005883_050 Hb_001484_120--Hb_005883_050 Hb_152079_010 Hb_152079_010 Hb_001484_120--Hb_152079_010 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_001771_130--Hb_000386_030 Hb_000390_070 Hb_000390_070 Hb_000009_210--Hb_000390_070 Hb_033834_010 Hb_033834_010 Hb_000009_210--Hb_033834_010 Hb_000627_080 Hb_000627_080 Hb_000009_210--Hb_000627_080 Hb_004137_060 Hb_004137_060 Hb_000009_210--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_000009_210--Hb_000832_130 Hb_126643_010 Hb_126643_010 Hb_000009_210--Hb_126643_010 Hb_000244_160 Hb_000244_160 Hb_027450_010--Hb_000244_160 Hb_034271_030 Hb_034271_030 Hb_027450_010--Hb_034271_030 Hb_001019_060 Hb_001019_060 Hb_027450_010--Hb_001019_060 Hb_000538_200 Hb_000538_200 Hb_027450_010--Hb_000538_200 Hb_002678_020 Hb_002678_020 Hb_027450_010--Hb_002678_020 Hb_001258_040 Hb_001258_040 Hb_027450_010--Hb_001258_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.668973 0.468204 0.157321 0.206549 0.58931 1.37469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134219 0.528039 0.701079 0.553161 0.260446

CAGE analysis