Hb_002102_030

Information

Type -
Description -
Location Contig2102: 8493-9160
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002102_030 0.0 - - -
2 Hb_000035_200 0.1256131488 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
3 Hb_001767_130 0.1339548026 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
4 Hb_000270_520 0.1377893284 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
5 Hb_131035_010 0.1429049331 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000270_510 0.1456439999 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
7 Hb_003050_390 0.1501444391 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
8 Hb_000322_070 0.154868348 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
9 Hb_000146_040 0.1585653731 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
10 Hb_001500_110 0.1596744076 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000172_510 0.1605013361 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
12 Hb_000025_630 0.1605722127 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
13 Hb_142218_020 0.1615296128 - - actin family protein [Populus trichocarpa]
14 Hb_005183_170 0.1627999639 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
15 Hb_007380_140 0.1630874399 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
16 Hb_001252_090 0.1633727442 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
17 Hb_003617_020 0.1639430018 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
18 Hb_146081_010 0.1642630302 - - PREDICTED: protein SCAI [Jatropha curcas]
19 Hb_162060_010 0.1648372125 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_310 0.1666927013 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_002102_030 Hb_002102_030 Hb_000035_200 Hb_000035_200 Hb_002102_030--Hb_000035_200 Hb_001767_130 Hb_001767_130 Hb_002102_030--Hb_001767_130 Hb_000270_520 Hb_000270_520 Hb_002102_030--Hb_000270_520 Hb_131035_010 Hb_131035_010 Hb_002102_030--Hb_131035_010 Hb_000270_510 Hb_000270_510 Hb_002102_030--Hb_000270_510 Hb_003050_390 Hb_003050_390 Hb_002102_030--Hb_003050_390 Hb_000146_040 Hb_000146_040 Hb_000035_200--Hb_000146_040 Hb_000696_010 Hb_000696_010 Hb_000035_200--Hb_000696_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_000035_200--Hb_000270_520 Hb_004970_140 Hb_004970_140 Hb_000035_200--Hb_004970_140 Hb_088163_010 Hb_088163_010 Hb_001767_130--Hb_088163_010 Hb_001767_130--Hb_000035_200 Hb_001767_130--Hb_131035_010 Hb_002148_020 Hb_002148_020 Hb_001767_130--Hb_002148_020 Hb_003925_020 Hb_003925_020 Hb_001767_130--Hb_003925_020 Hb_142218_020 Hb_142218_020 Hb_000270_520--Hb_142218_020 Hb_000270_520--Hb_003050_390 Hb_000270_520--Hb_000270_510 Hb_005137_040 Hb_005137_040 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_002192_030 Hb_002192_030 Hb_131035_010--Hb_002192_030 Hb_007286_020 Hb_007286_020 Hb_131035_010--Hb_007286_020 Hb_131035_010--Hb_001500_110 Hb_027760_070 Hb_027760_070 Hb_131035_010--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_131035_010--Hb_146081_010 Hb_000270_510--Hb_003050_390 Hb_003528_010 Hb_003528_010 Hb_000270_510--Hb_003528_010 Hb_004324_400 Hb_004324_400 Hb_000270_510--Hb_004324_400 Hb_001135_130 Hb_001135_130 Hb_000270_510--Hb_001135_130 Hb_000270_510--Hb_000035_200 Hb_000080_150 Hb_000080_150 Hb_003050_390--Hb_000080_150 Hb_003050_390--Hb_001135_130 Hb_003050_390--Hb_003528_010 Hb_004204_170 Hb_004204_170 Hb_003050_390--Hb_004204_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91775 2.06054 2.33677 6.2168 2.73677 2.9841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510241 1.40339 3.38179 2.21443 0.672646

CAGE analysis