Hb_003925_020

Information

Type -
Description -
Location Contig3925: 12040-18832
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05520g
description POPTRDRAFT_576348; cellulose synthase family protein
nr
ID XP_012086144.1
description PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
swissprot
ID Q941L0
description Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2
trembl
ID U5FQH4
description Cellulose synthase OS=Populus trichocarpa GN=POPTR_0016s05520g PE=3 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase a catalytic subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39322: 13117-18806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_020 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
2 Hb_000264_110 0.1268575723 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
3 Hb_004970_140 0.1358599891 - - PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
4 Hb_002150_040 0.1423844079 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
5 Hb_000915_240 0.1544582963 - - catalytic, putative [Ricinus communis]
6 Hb_005218_020 0.1571696043 - - Uncharacterized protein isoform 3 [Theobroma cacao]
7 Hb_003929_270 0.157401858 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
8 Hb_000032_070 0.1579133869 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
9 Hb_001767_130 0.1588372714 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
10 Hb_000352_120 0.1603002325 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
11 Hb_000477_100 0.1638811196 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
12 Hb_005695_120 0.1653873762 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
13 Hb_003529_030 0.1654032325 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_000094_210 0.1656347458 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
15 Hb_011930_150 0.1657274532 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
16 Hb_000212_380 0.1659820416 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
17 Hb_000212_450 0.1665418711 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
18 Hb_000066_030 0.1667459589 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
19 Hb_003998_040 0.1674701664 - - organic anion transporter, putative [Ricinus communis]
20 Hb_000035_200 0.1678399303 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]

Gene co-expression network

sample Hb_003925_020 Hb_003925_020 Hb_000264_110 Hb_000264_110 Hb_003925_020--Hb_000264_110 Hb_004970_140 Hb_004970_140 Hb_003925_020--Hb_004970_140 Hb_002150_040 Hb_002150_040 Hb_003925_020--Hb_002150_040 Hb_000915_240 Hb_000915_240 Hb_003925_020--Hb_000915_240 Hb_005218_020 Hb_005218_020 Hb_003925_020--Hb_005218_020 Hb_003929_270 Hb_003929_270 Hb_003925_020--Hb_003929_270 Hb_000264_110--Hb_003929_270 Hb_005695_120 Hb_005695_120 Hb_000264_110--Hb_005695_120 Hb_002053_140 Hb_002053_140 Hb_000264_110--Hb_002053_140 Hb_000127_140 Hb_000127_140 Hb_000264_110--Hb_000127_140 Hb_000050_200 Hb_000050_200 Hb_000264_110--Hb_000050_200 Hb_003470_090 Hb_003470_090 Hb_000264_110--Hb_003470_090 Hb_000035_200 Hb_000035_200 Hb_004970_140--Hb_000035_200 Hb_000212_380 Hb_000212_380 Hb_004970_140--Hb_000212_380 Hb_002375_040 Hb_002375_040 Hb_004970_140--Hb_002375_040 Hb_002660_150 Hb_002660_150 Hb_004970_140--Hb_002660_150 Hb_011282_060 Hb_011282_060 Hb_004970_140--Hb_011282_060 Hb_000184_240 Hb_000184_240 Hb_004970_140--Hb_000184_240 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_000136_100 Hb_000136_100 Hb_002150_040--Hb_000136_100 Hb_002686_310 Hb_002686_310 Hb_000915_240--Hb_002686_310 Hb_001369_360 Hb_001369_360 Hb_000915_240--Hb_001369_360 Hb_000109_170 Hb_000109_170 Hb_000915_240--Hb_000109_170 Hb_000352_300 Hb_000352_300 Hb_000915_240--Hb_000352_300 Hb_000130_180 Hb_000130_180 Hb_000915_240--Hb_000130_180 Hb_001014_210 Hb_001014_210 Hb_000915_240--Hb_001014_210 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_003929_270--Hb_002053_140 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07766 1.17984 5.11134 22.5469 6.87182 7.86328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29106 4.68759 13.0133 12.1959 5.20339

CAGE analysis