Hb_002079_020

Information

Type -
Description -
Location Contig2079: 10648-11896
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21480: 6083-9705
cDNA
(Sanger)
(ID:Location)		 005_N13r.ab1: 11331-32336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_020 0.0 - - -
2 Hb_002972_060 0.1928936896 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000300_140 0.2094933705 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_068804_060 0.2099688001 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
5 Hb_007290_020 0.2099829166 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
6 Hb_007356_010 0.210555986 - - CTV.19 [Citrus trifoliata]
7 Hb_163132_010 0.2110998626 - - -
8 Hb_033312_110 0.2114521915 - - -
9 Hb_021943_070 0.2136826394 - - -
10 Hb_004907_030 0.216371088 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
11 Hb_009119_010 0.2182597138 - - -
12 Hb_005318_010 0.2279218203 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
13 Hb_008096_020 0.2282977791 - - -
14 Hb_094132_010 0.2301100044 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
15 Hb_000270_540 0.2320031951 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
16 Hb_000953_120 0.2336599288 - - -
17 Hb_000193_030 0.2377127351 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
18 Hb_013040_010 0.2381657768 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
19 Hb_005723_070 0.2394769123 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
20 Hb_001660_140 0.2491017553 - - -

Gene co-expression network

sample Hb_002079_020 Hb_002079_020 Hb_002972_060 Hb_002972_060 Hb_002079_020--Hb_002972_060 Hb_000300_140 Hb_000300_140 Hb_002079_020--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_002079_020--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_002079_020--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_002079_020--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_002079_020--Hb_163132_010 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002450_130 Hb_002450_130 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_000300_140--Hb_068804_060 Hb_000300_140--Hb_007290_020 Hb_000300_140--Hb_007356_010 Hb_000300_140--Hb_163132_010 Hb_033312_110 Hb_033312_110 Hb_000300_140--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_000300_140--Hb_004907_030 Hb_068804_060--Hb_007290_020 Hb_068804_060--Hb_007356_010 Hb_068804_060--Hb_163132_010 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_007290_020--Hb_007356_010 Hb_007290_020--Hb_163132_010 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030 Hb_007356_010--Hb_163132_010 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_163132_010--Hb_033312_110 Hb_163132_010--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 5.04429 0 6.14973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.838832 0 0.196202 0

CAGE analysis