Hb_172921_010

Information

Type -
Description -
Location Contig172921: 4441-4893
Sequence    

Annotation

kegg
ID cic:CICLE_v10006890mg
description hypothetical protein
nr
ID XP_006421106.1
description hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4SBL0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006890mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006890mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172921_010 0.0 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
2 Hb_001085_140 0.2186185365 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002016_030 0.2514428512 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021888_040 0.2630432754 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
5 Hb_002079_020 0.2733382484 - - -
6 Hb_002379_040 0.2906250184 - - -
7 Hb_000350_040 0.2920380954 - - -
8 Hb_000243_370 0.2995070989 - - hypothetical protein VITISV_010022 [Vitis vinifera]
9 Hb_010367_020 0.3036193558 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
10 Hb_000788_050 0.3128824988 - - Chloride channel protein CLC-c [Populus trichocarpa]
11 Hb_099298_010 0.3203270789 - - -
12 Hb_009119_010 0.3260015442 - - -
13 Hb_000953_120 0.3262670332 - - -
14 Hb_001488_310 0.3301431429 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
15 Hb_005368_030 0.330270062 - - -
16 Hb_005263_010 0.3338036694 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
17 Hb_120052_010 0.3368991703 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
18 Hb_182507_010 0.33713054 - - -
19 Hb_001660_140 0.3377909869 - - -
20 Hb_011200_010 0.3391507649 - - -

Gene co-expression network

sample Hb_172921_010 Hb_172921_010 Hb_001085_140 Hb_001085_140 Hb_172921_010--Hb_001085_140 Hb_002016_030 Hb_002016_030 Hb_172921_010--Hb_002016_030 Hb_021888_040 Hb_021888_040 Hb_172921_010--Hb_021888_040 Hb_002079_020 Hb_002079_020 Hb_172921_010--Hb_002079_020 Hb_002379_040 Hb_002379_040 Hb_172921_010--Hb_002379_040 Hb_000350_040 Hb_000350_040 Hb_172921_010--Hb_000350_040 Hb_002367_030 Hb_002367_030 Hb_001085_140--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_001085_140--Hb_003540_180 Hb_001085_140--Hb_000350_040 Hb_017400_010 Hb_017400_010 Hb_001085_140--Hb_017400_010 Hb_001102_310 Hb_001102_310 Hb_001085_140--Hb_001102_310 Hb_000953_120 Hb_000953_120 Hb_002016_030--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_002016_030--Hb_009119_010 Hb_041601_010 Hb_041601_010 Hb_002016_030--Hb_041601_010 Hb_000025_080 Hb_000025_080 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_021888_040--Hb_002379_040 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_021888_040--Hb_003551_010 Hb_003206_100 Hb_003206_100 Hb_021888_040--Hb_003206_100 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010 Hb_002972_060 Hb_002972_060 Hb_002079_020--Hb_002972_060 Hb_000300_140 Hb_000300_140 Hb_002079_020--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_002079_020--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_002079_020--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_002079_020--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_002079_020--Hb_163132_010 Hb_002379_040--Hb_011200_010 Hb_002379_040--Hb_059978_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_002379_040--Hb_003551_010 Hb_011316_140 Hb_011316_140 Hb_000350_040--Hb_011316_140 Hb_104362_010 Hb_104362_010 Hb_000350_040--Hb_104362_010 Hb_000347_210 Hb_000347_210 Hb_000350_040--Hb_000347_210 Hb_000251_020 Hb_000251_020 Hb_000350_040--Hb_000251_020 Hb_000896_070 Hb_000896_070 Hb_000350_040--Hb_000896_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.345202 0 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.124621 0 0 0

CAGE analysis