Hb_000347_210

Information

Type -
Description -
Location Contig347: 219013-220474
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16690g
description hypothetical protein
nr
ID XP_012068856.1
description PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5GQ24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_210 0.0 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
2 Hb_029508_020 0.1061327744 - - -
3 Hb_000541_030 0.1081180113 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012799_080 0.1220876111 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
5 Hb_091537_010 0.1444479091 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_000896_070 0.1622054259 - - ammonium transporter, putative [Ricinus communis]
7 Hb_119808_020 0.1634594298 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_000566_060 0.1699053341 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004317_020 0.1732756493 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
10 Hb_002235_330 0.1811616446 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
11 Hb_051900_020 0.1824062383 - - JHL22C18.7 [Jatropha curcas]
12 Hb_034858_010 0.1834464644 - - -
13 Hb_016734_050 0.1835996907 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
14 Hb_003050_210 0.185996332 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
15 Hb_001102_310 0.1862974706 - - Protein AFR, putative [Ricinus communis]
16 Hb_010068_010 0.1890097647 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
17 Hb_002028_250 0.1914397011 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
18 Hb_014508_020 0.1922092656 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
19 Hb_000375_210 0.1960046163 - - -
20 Hb_000926_240 0.1960127074 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]

Gene co-expression network

sample Hb_000347_210 Hb_000347_210 Hb_029508_020 Hb_029508_020 Hb_000347_210--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_000347_210--Hb_000541_030 Hb_012799_080 Hb_012799_080 Hb_000347_210--Hb_012799_080 Hb_091537_010 Hb_091537_010 Hb_000347_210--Hb_091537_010 Hb_000896_070 Hb_000896_070 Hb_000347_210--Hb_000896_070 Hb_119808_020 Hb_119808_020 Hb_000347_210--Hb_119808_020 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_091537_010 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_091537_010 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_012799_080--Hb_016734_050 Hb_012799_080--Hb_029508_020 Hb_012799_080--Hb_000541_030 Hb_015175_060 Hb_015175_060 Hb_012799_080--Hb_015175_060 Hb_012799_080--Hb_119808_020 Hb_091537_010--Hb_001102_310 Hb_091537_010--Hb_119808_020 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_001754_160 Hb_001754_160 Hb_000896_070--Hb_001754_160 Hb_000896_070--Hb_012799_080 Hb_000896_070--Hb_119808_020 Hb_000935_060 Hb_000935_060 Hb_000896_070--Hb_000935_060 Hb_002936_020 Hb_002936_020 Hb_000896_070--Hb_002936_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0654819 0.76651 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0495351 0 0.0200151 0

CAGE analysis