Hb_119808_020

Information

Type -
Description -
Location Contig119808: 4764-6747
Sequence    

Annotation

kegg
ID vvi:100246293
description premnaspirodiene oxygenase-like
nr
ID XP_010644547.1
description PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
swissprot
ID O48923
description Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 PE=2 SV=1
trembl
ID F6I534
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00110 PE=3 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05950: 5339-6277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119808_020 0.0 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
2 Hb_001541_220 0.1202860291 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
3 Hb_029508_020 0.1266279056 - - -
4 Hb_000541_030 0.1472492249 - - conserved hypothetical protein [Ricinus communis]
5 Hb_091537_010 0.152393087 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_013654_030 0.158548218 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
7 Hb_000281_050 0.1628709307 - - PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
8 Hb_000347_210 0.1634594298 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
9 Hb_146902_010 0.1705266023 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012799_080 0.1710378235 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
11 Hb_011316_140 0.1790529416 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
12 Hb_001102_310 0.1884841348 - - Protein AFR, putative [Ricinus communis]
13 Hb_015175_060 0.193492191 - - copper transport protein atox1, putative [Ricinus communis]
14 Hb_016734_050 0.1973301621 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
15 Hb_000896_070 0.2014195101 - - ammonium transporter, putative [Ricinus communis]
16 Hb_001491_080 0.2165042799 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000803_280 0.2165099797 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
18 Hb_003018_220 0.2165153629 - - Snakin-2 [Gossypium arboreum]
19 Hb_004918_020 0.2165191418 - - -
20 Hb_000002_020 0.2165458726 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_119808_020 Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_146902_010 Hb_146902_010 Hb_001541_220--Hb_146902_010 Hb_067034_020 Hb_067034_020 Hb_001541_220--Hb_067034_020 Hb_011316_140 Hb_011316_140 Hb_001541_220--Hb_011316_140 Hb_001541_220--Hb_013654_030 Hb_008971_030 Hb_008971_030 Hb_001541_220--Hb_008971_030 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_091537_010 Hb_000347_210 Hb_000347_210 Hb_029508_020--Hb_000347_210 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_091537_010 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_091537_010--Hb_001102_310 Hb_091537_010--Hb_000347_210 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_015175_060 Hb_015175_060 Hb_013654_030--Hb_015175_060 Hb_011476_020 Hb_011476_020 Hb_013654_030--Hb_011476_020 Hb_013654_030--Hb_016734_050 Hb_159327_010 Hb_159327_010 Hb_013654_030--Hb_159327_010 Hb_003914_040 Hb_003914_040 Hb_000281_050--Hb_003914_040 Hb_007040_020 Hb_007040_020 Hb_000281_050--Hb_007040_020 Hb_000295_150 Hb_000295_150 Hb_000281_050--Hb_000295_150 Hb_000125_050 Hb_000125_050 Hb_000281_050--Hb_000125_050 Hb_008686_050 Hb_008686_050 Hb_000281_050--Hb_008686_050 Hb_000494_140 Hb_000494_140 Hb_000281_050--Hb_000494_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0405246 0.20096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0240701 0 0 0

CAGE analysis