Hb_000541_030

Information

Type -
Description -
Location Contig541: 27870-28751
Sequence    

Annotation

kegg
ID rcu:RCOM_0806960
description hypothetical protein
nr
ID XP_002525747.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIC8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0806960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47866: 28467-28683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000541_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029508_020 0.0242070054 - - -
3 Hb_091537_010 0.1057043416 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_000347_210 0.1081180113 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
5 Hb_119808_020 0.1472492249 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
6 Hb_016734_050 0.1520244696 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_014508_020 0.1546026841 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
8 Hb_002783_290 0.1584218502 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
9 Hb_118730_050 0.158422972 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
10 Hb_178734_010 0.1584247082 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
11 Hb_049573_010 0.1585142744 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003874_030 0.1587717599 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
13 Hb_005914_190 0.1594021645 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
14 Hb_010261_070 0.1598450236 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
15 Hb_000194_040 0.1598836576 - - carbonic anhydrase, putative [Ricinus communis]
16 Hb_054865_110 0.159946748 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000628_090 0.1601236558 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
18 Hb_001102_310 0.1601605644 - - Protein AFR, putative [Ricinus communis]
19 Hb_099538_020 0.1601622974 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
20 Hb_111442_010 0.1610029954 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000541_030 Hb_000541_030 Hb_029508_020 Hb_029508_020 Hb_000541_030--Hb_029508_020 Hb_091537_010 Hb_091537_010 Hb_000541_030--Hb_091537_010 Hb_000347_210 Hb_000347_210 Hb_000541_030--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_000541_030--Hb_119808_020 Hb_016734_050 Hb_016734_050 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_029508_020--Hb_091537_010 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_029508_020--Hb_016734_050 Hb_091537_010--Hb_001102_310 Hb_091537_010--Hb_000347_210 Hb_091537_010--Hb_119808_020 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_012799_080 Hb_012799_080 Hb_000347_210--Hb_012799_080 Hb_000896_070 Hb_000896_070 Hb_000347_210--Hb_000896_070 Hb_000347_210--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_015175_060 Hb_015175_060 Hb_016734_050--Hb_015175_060 Hb_016734_050--Hb_012799_080 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080 Hb_002028_250 Hb_002028_250 Hb_014508_020--Hb_002028_250 Hb_000389_120 Hb_000389_120 Hb_014508_020--Hb_000389_120 Hb_099538_020 Hb_099538_020 Hb_014508_020--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_014508_020--Hb_010261_070 Hb_005914_190 Hb_005914_190 Hb_014508_020--Hb_005914_190 Hb_002289_160 Hb_002289_160 Hb_014508_020--Hb_002289_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.121156 1.6809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0934342 0 0 0

CAGE analysis