Hb_008971_030

Information

Type -
Description -
Location Contig8971: 49130-49960
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008971_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_146902_010 0.173680365 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001541_220 0.1903436658 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
4 Hb_000111_440 0.2046137773 - - -
5 Hb_001431_100 0.2065735818 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
6 Hb_159327_010 0.2092692725 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
7 Hb_119808_020 0.237518361 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_005217_070 0.2422961855 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_330 0.2518325142 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
10 Hb_001976_070 0.2572972946 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
11 Hb_179367_020 0.25740332 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_000908_030 0.2582495565 - - small heat-shock protein, putative [Ricinus communis]
13 Hb_000284_280 0.2594367493 - - -
14 Hb_000281_050 0.2608210392 - - PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
15 Hb_011316_140 0.2619609253 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
16 Hb_132880_020 0.2626242016 - - hypothetical protein VITISV_026364 [Vitis vinifera]
17 Hb_004112_060 0.2651495307 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
18 Hb_007100_010 0.2655814944 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
19 Hb_003376_370 0.2668817997 - - protein binding protein, putative [Ricinus communis]
20 Hb_001152_040 0.26825374 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_008971_030 Hb_008971_030 Hb_146902_010 Hb_146902_010 Hb_008971_030--Hb_146902_010 Hb_001541_220 Hb_001541_220 Hb_008971_030--Hb_001541_220 Hb_000111_440 Hb_000111_440 Hb_008971_030--Hb_000111_440 Hb_001431_100 Hb_001431_100 Hb_008971_030--Hb_001431_100 Hb_159327_010 Hb_159327_010 Hb_008971_030--Hb_159327_010 Hb_119808_020 Hb_119808_020 Hb_008971_030--Hb_119808_020 Hb_146902_010--Hb_001541_220 Hb_146902_010--Hb_119808_020 Hb_011316_140 Hb_011316_140 Hb_146902_010--Hb_011316_140 Hb_067034_020 Hb_067034_020 Hb_146902_010--Hb_067034_020 Hb_000284_280 Hb_000284_280 Hb_146902_010--Hb_000284_280 Hb_001541_220--Hb_119808_020 Hb_001541_220--Hb_067034_020 Hb_001541_220--Hb_011316_140 Hb_013654_030 Hb_013654_030 Hb_001541_220--Hb_013654_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_007432_010 Hb_007432_010 Hb_000111_440--Hb_007432_010 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_051997_010 Hb_051997_010 Hb_000111_440--Hb_051997_010 Hb_007100_010 Hb_007100_010 Hb_001431_100--Hb_007100_010 Hb_004308_020 Hb_004308_020 Hb_001431_100--Hb_004308_020 Hb_006469_110 Hb_006469_110 Hb_001431_100--Hb_006469_110 Hb_001976_070 Hb_001976_070 Hb_001431_100--Hb_001976_070 Hb_064194_010 Hb_064194_010 Hb_001431_100--Hb_064194_010 Hb_159327_010--Hb_013654_030 Hb_015175_060 Hb_015175_060 Hb_159327_010--Hb_015175_060 Hb_159327_010--Hb_004308_020 Hb_011476_020 Hb_011476_020 Hb_159327_010--Hb_011476_020 Hb_004785_050 Hb_004785_050 Hb_159327_010--Hb_004785_050 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0233813 0.109983 0.218281 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0504719 0 0 0

CAGE analysis