Hb_003740_030

Information

Type transcription factor
Description TF Family: RAV
Location Contig3740: 42224-43225
Sequence    

Annotation

kegg
ID rcu:RCOM_0191490
description DNA-binding protein RAV1, putative
nr
ID XP_002532356.1
description DNA-binding protein RAV1, putative [Ricinus communis]
swissprot
ID Q9C688
description AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1
trembl
ID B9T287
description DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0191490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2 erf and b3 domain-containing transcription factor at1g50680-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003740_030 0.0 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
2 Hb_000866_100 0.1129535884 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
3 Hb_007382_090 0.1632910564 - - protein binding protein, putative [Ricinus communis]
4 Hb_001390_040 0.1903434999 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
5 Hb_007474_020 0.2073552087 - - multicopper oxidase, putative [Ricinus communis]
6 Hb_034498_010 0.2107656997 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
7 Hb_000034_150 0.2120003281 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
8 Hb_000069_650 0.2135168631 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000284_280 0.2158692892 - - -
10 Hb_000031_330 0.2170147528 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
11 Hb_004619_090 0.2187041975 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000663_070 0.2200165826 - - cyclin A, putative [Ricinus communis]
13 Hb_003540_020 0.2202024101 - - conserved hypothetical protein [Ricinus communis]
14 Hb_025163_020 0.2202549214 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
15 Hb_000890_140 0.223343446 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
16 Hb_001565_090 0.2250341115 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
17 Hb_000175_150 0.2267327571 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
18 Hb_000527_020 0.2268667011 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
19 Hb_000556_130 0.2277684645 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
20 Hb_000656_320 0.2281376121 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003740_030 Hb_003740_030 Hb_000866_100 Hb_000866_100 Hb_003740_030--Hb_000866_100 Hb_007382_090 Hb_007382_090 Hb_003740_030--Hb_007382_090 Hb_001390_040 Hb_001390_040 Hb_003740_030--Hb_001390_040 Hb_007474_020 Hb_007474_020 Hb_003740_030--Hb_007474_020 Hb_034498_010 Hb_034498_010 Hb_003740_030--Hb_034498_010 Hb_000034_150 Hb_000034_150 Hb_003740_030--Hb_000034_150 Hb_000284_280 Hb_000284_280 Hb_000866_100--Hb_000284_280 Hb_000866_100--Hb_034498_010 Hb_000866_100--Hb_001390_040 Hb_022845_010 Hb_022845_010 Hb_000866_100--Hb_022845_010 Hb_001322_220 Hb_001322_220 Hb_000866_100--Hb_001322_220 Hb_005332_130 Hb_005332_130 Hb_007382_090--Hb_005332_130 Hb_000031_330 Hb_000031_330 Hb_007382_090--Hb_000031_330 Hb_000111_440 Hb_000111_440 Hb_007382_090--Hb_000111_440 Hb_003119_040 Hb_003119_040 Hb_007382_090--Hb_003119_040 Hb_005217_070 Hb_005217_070 Hb_007382_090--Hb_005217_070 Hb_001307_150 Hb_001307_150 Hb_001390_040--Hb_001307_150 Hb_000527_020 Hb_000527_020 Hb_001390_040--Hb_000527_020 Hb_000890_140 Hb_000890_140 Hb_001390_040--Hb_000890_140 Hb_000856_390 Hb_000856_390 Hb_001390_040--Hb_000856_390 Hb_003847_060 Hb_003847_060 Hb_001390_040--Hb_003847_060 Hb_001390_040--Hb_007474_020 Hb_101133_050 Hb_101133_050 Hb_007474_020--Hb_101133_050 Hb_007474_020--Hb_000856_390 Hb_007474_020--Hb_001307_150 Hb_000317_120 Hb_000317_120 Hb_007474_020--Hb_000317_120 Hb_118282_020 Hb_118282_020 Hb_007474_020--Hb_118282_020 Hb_034498_010--Hb_000890_140 Hb_034498_010--Hb_022845_010 Hb_005141_020 Hb_005141_020 Hb_034498_010--Hb_005141_020 Hb_034498_010--Hb_000527_020 Hb_001190_030 Hb_001190_030 Hb_034498_010--Hb_001190_030 Hb_034498_010--Hb_001322_220 Hb_002205_180 Hb_002205_180 Hb_000034_150--Hb_002205_180 Hb_014497_070 Hb_014497_070 Hb_000034_150--Hb_014497_070 Hb_004102_090 Hb_004102_090 Hb_000034_150--Hb_004102_090 Hb_124677_050 Hb_124677_050 Hb_000034_150--Hb_124677_050 Hb_000663_070 Hb_000663_070 Hb_000034_150--Hb_000663_070 Hb_000638_240 Hb_000638_240 Hb_000034_150--Hb_000638_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0221392 0.268269 0.158338 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0397577 0 0.0159876 0

CAGE analysis