Hb_005332_130

Information

Type -
Description -
Location Contig5332: 91525-92152
Sequence    

Annotation

kegg
ID rcu:RCOM_0530970
description Mavicyanin, putative
nr
ID XP_002526946.1
description Mavicyanin, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9SLS7
description Mavicyanin, putative OS=Ricinus communis GN=RCOM_0530970 PE=4 SV=1
Gene Ontology
ID GO:0009055
description early nodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47455: 92481-97342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_130 0.0 - - Mavicyanin, putative [Ricinus communis]
2 Hb_007382_090 0.1631677768 - - protein binding protein, putative [Ricinus communis]
3 Hb_000808_120 0.1884456732 - - -
4 Hb_001775_090 0.1918025371 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
5 Hb_000577_050 0.1969931601 - - -
6 Hb_007894_100 0.2033023219 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
7 Hb_003119_040 0.2055580424 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
8 Hb_000193_060 0.2074548836 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
9 Hb_000656_320 0.2123095092 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
10 Hb_011826_010 0.2201026649 - - Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_001459_040 0.221666633 - - Ankyrin repeat-containing protein [Medicago truncatula]
12 Hb_006060_010 0.2250954687 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
13 Hb_001762_050 0.2254841754 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
14 Hb_002217_370 0.2341342545 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105643685 [Jatropha curcas]
15 Hb_008864_100 0.2364662526 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
16 Hb_005217_070 0.2371509949 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003740_030 0.2398239522 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
18 Hb_008250_020 0.240892743 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
19 Hb_013344_010 0.2420489885 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_173271_010 0.243452582 - - Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_005332_130 Hb_005332_130 Hb_007382_090 Hb_007382_090 Hb_005332_130--Hb_007382_090 Hb_000808_120 Hb_000808_120 Hb_005332_130--Hb_000808_120 Hb_001775_090 Hb_001775_090 Hb_005332_130--Hb_001775_090 Hb_000577_050 Hb_000577_050 Hb_005332_130--Hb_000577_050 Hb_007894_100 Hb_007894_100 Hb_005332_130--Hb_007894_100 Hb_003119_040 Hb_003119_040 Hb_005332_130--Hb_003119_040 Hb_003740_030 Hb_003740_030 Hb_007382_090--Hb_003740_030 Hb_000031_330 Hb_000031_330 Hb_007382_090--Hb_000031_330 Hb_000111_440 Hb_000111_440 Hb_007382_090--Hb_000111_440 Hb_007382_090--Hb_003119_040 Hb_005217_070 Hb_005217_070 Hb_007382_090--Hb_005217_070 Hb_071781_010 Hb_071781_010 Hb_000808_120--Hb_071781_010 Hb_002343_030 Hb_002343_030 Hb_000808_120--Hb_002343_030 Hb_004112_060 Hb_004112_060 Hb_000808_120--Hb_004112_060 Hb_053073_010 Hb_053073_010 Hb_000808_120--Hb_053073_010 Hb_013834_010 Hb_013834_010 Hb_000808_120--Hb_013834_010 Hb_173271_010 Hb_173271_010 Hb_001775_090--Hb_173271_010 Hb_001775_090--Hb_000577_050 Hb_000162_130 Hb_000162_130 Hb_001775_090--Hb_000162_130 Hb_183192_010 Hb_183192_010 Hb_001775_090--Hb_183192_010 Hb_001459_040 Hb_001459_040 Hb_001775_090--Hb_001459_040 Hb_001541_190 Hb_001541_190 Hb_001775_090--Hb_001541_190 Hb_000656_320 Hb_000656_320 Hb_000577_050--Hb_000656_320 Hb_006060_010 Hb_006060_010 Hb_000577_050--Hb_006060_010 Hb_003599_060 Hb_003599_060 Hb_000577_050--Hb_003599_060 Hb_002217_370 Hb_002217_370 Hb_000577_050--Hb_002217_370 Hb_000577_050--Hb_001541_190 Hb_000256_170 Hb_000256_170 Hb_007894_100--Hb_000256_170 Hb_000574_180 Hb_000574_180 Hb_007894_100--Hb_000574_180 Hb_000397_140 Hb_000397_140 Hb_007894_100--Hb_000397_140 Hb_000193_060 Hb_000193_060 Hb_007894_100--Hb_000193_060 Hb_007894_100--Hb_006060_010 Hb_000261_340 Hb_000261_340 Hb_007894_100--Hb_000261_340 Hb_003119_040--Hb_000193_060 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100017 0.239746 0.869478 0.602576 0 0.0447188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0916014 0 0.0378019 0

CAGE analysis