Hb_004112_060

Information

Type -
Description -
Location Contig4112: 41734-45339
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01950g
description hypothetical protein
nr
ID XP_006372471.1
description hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FGL4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s01950g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40695: 43160-44377 , PASA_asmbl_40696: 45250-46320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004112_060 0.0 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
2 Hb_001459_040 0.1833653267 - - Ankyrin repeat-containing protein [Medicago truncatula]
3 Hb_000808_120 0.2168704436 - - -
4 Hb_002243_050 0.2188395076 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
5 Hb_053073_010 0.2236641459 - - -
6 Hb_001514_250 0.2369002386 - - GAST1 protein precursor, putative [Ricinus communis]
7 Hb_071781_010 0.2432776534 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
8 Hb_000532_150 0.2459099845 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
9 Hb_005170_020 0.2460033783 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_001404_030 0.2532152071 - - DWNN domain isoform 3 [Theobroma cacao]
11 Hb_108670_010 0.2539113867 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_159327_010 0.2553693451 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
13 Hb_004631_200 0.255684567 - - conserved hypothetical protein [Ricinus communis]
14 Hb_113676_010 0.2558104261 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
15 Hb_129105_010 0.2562848096 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_008959_040 0.2563434993 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_000649_340 0.2592757814 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
18 Hb_005332_130 0.2599590015 - - Mavicyanin, putative [Ricinus communis]
19 Hb_055277_010 0.2631403394 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
20 Hb_008971_030 0.2651495307 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004112_060 Hb_004112_060 Hb_001459_040 Hb_001459_040 Hb_004112_060--Hb_001459_040 Hb_000808_120 Hb_000808_120 Hb_004112_060--Hb_000808_120 Hb_002243_050 Hb_002243_050 Hb_004112_060--Hb_002243_050 Hb_053073_010 Hb_053073_010 Hb_004112_060--Hb_053073_010 Hb_001514_250 Hb_001514_250 Hb_004112_060--Hb_001514_250 Hb_071781_010 Hb_071781_010 Hb_004112_060--Hb_071781_010 Hb_113676_010 Hb_113676_010 Hb_001459_040--Hb_113676_010 Hb_173271_010 Hb_173271_010 Hb_001459_040--Hb_173271_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_108670_010 Hb_108670_010 Hb_001459_040--Hb_108670_010 Hb_000808_120--Hb_071781_010 Hb_005332_130 Hb_005332_130 Hb_000808_120--Hb_005332_130 Hb_002343_030 Hb_002343_030 Hb_000808_120--Hb_002343_030 Hb_000808_120--Hb_053073_010 Hb_013834_010 Hb_013834_010 Hb_000808_120--Hb_013834_010 Hb_000816_190 Hb_000816_190 Hb_002243_050--Hb_000816_190 Hb_004117_330 Hb_004117_330 Hb_002243_050--Hb_004117_330 Hb_000649_340 Hb_000649_340 Hb_002243_050--Hb_000649_340 Hb_007575_090 Hb_007575_090 Hb_002243_050--Hb_007575_090 Hb_054865_160 Hb_054865_160 Hb_002243_050--Hb_054865_160 Hb_001269_090 Hb_001269_090 Hb_002243_050--Hb_001269_090 Hb_001208_020 Hb_001208_020 Hb_053073_010--Hb_001208_020 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010 Hb_000532_150 Hb_000532_150 Hb_001514_250--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001514_250--Hb_007163_050 Hb_000139_050 Hb_000139_050 Hb_001514_250--Hb_000139_050 Hb_062226_150 Hb_062226_150 Hb_001514_250--Hb_062226_150 Hb_002026_050 Hb_002026_050 Hb_001514_250--Hb_002026_050 Hb_000300_190 Hb_000300_190 Hb_001514_250--Hb_000300_190 Hb_008119_030 Hb_008119_030 Hb_071781_010--Hb_008119_030 Hb_000742_190 Hb_000742_190 Hb_071781_010--Hb_000742_190 Hb_002900_100 Hb_002900_100 Hb_071781_010--Hb_002900_100 Hb_002675_090 Hb_002675_090 Hb_071781_010--Hb_002675_090 Hb_003605_040 Hb_003605_040 Hb_071781_010--Hb_003605_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126799 1.21982 2.0302 3.39867 0.201319 0.321972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0980576 0.69361 0 0 0

CAGE analysis