Hb_173271_010

Information

Type -
Description -
Location Contig173271: 794-1114
Sequence    

Annotation

kegg
ID rcu:RCOM_1331470
description Disease resistance protein RPP13, putative (EC:3.1.3.16)
nr
ID XP_002521786.1
description Disease resistance protein RPP13, putative [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9S717
description Disease resistance protein RPP13, putative OS=Ricinus communis GN=RCOM_1331470 PE=4 SV=1
Gene Ontology
ID GO:0004721
description cc-nbs-lrr class disease resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173271_010 0.0 - - Disease resistance protein RPP13, putative [Ricinus communis]
2 Hb_001775_090 0.1422684787 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
3 Hb_000162_130 0.1501330178 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005048_120 0.1521410528 - - -
5 Hb_001459_040 0.1528706058 - - Ankyrin repeat-containing protein [Medicago truncatula]
6 Hb_002133_010 0.1567645618 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
7 Hb_064885_010 0.1582907871 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_155946_030 0.1596459267 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_101058_020 0.1603588978 - - DWNN domain isoform 2 [Theobroma cacao]
10 Hb_113676_010 0.1639471574 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
11 Hb_002007_070 0.1645347862 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
12 Hb_033327_010 0.1697484207 - - SYM8 [Pisum sativum]
13 Hb_000665_090 0.1736620362 - - conserved hypothetical protein [Ricinus communis]
14 Hb_116103_010 0.1741448331 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
15 Hb_002048_100 0.1746160487 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
16 Hb_007894_020 0.1754116147 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
17 Hb_001430_010 0.1794531147 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
18 Hb_011028_040 0.1826209826 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_000904_110 0.185352163 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
20 Hb_000592_070 0.1885806864 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]

Gene co-expression network

sample Hb_173271_010 Hb_173271_010 Hb_001775_090 Hb_001775_090 Hb_173271_010--Hb_001775_090 Hb_000162_130 Hb_000162_130 Hb_173271_010--Hb_000162_130 Hb_005048_120 Hb_005048_120 Hb_173271_010--Hb_005048_120 Hb_001459_040 Hb_001459_040 Hb_173271_010--Hb_001459_040 Hb_002133_010 Hb_002133_010 Hb_173271_010--Hb_002133_010 Hb_064885_010 Hb_064885_010 Hb_173271_010--Hb_064885_010 Hb_000577_050 Hb_000577_050 Hb_001775_090--Hb_000577_050 Hb_001775_090--Hb_000162_130 Hb_183192_010 Hb_183192_010 Hb_001775_090--Hb_183192_010 Hb_001775_090--Hb_001459_040 Hb_001541_190 Hb_001541_190 Hb_001775_090--Hb_001541_190 Hb_002007_070 Hb_002007_070 Hb_000162_130--Hb_002007_070 Hb_155946_030 Hb_155946_030 Hb_000162_130--Hb_155946_030 Hb_001579_070 Hb_001579_070 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000680_180 Hb_000680_180 Hb_000162_130--Hb_000680_180 Hb_000003_240 Hb_000003_240 Hb_000162_130--Hb_000003_240 Hb_002936_030 Hb_002936_030 Hb_005048_120--Hb_002936_030 Hb_012272_010 Hb_012272_010 Hb_005048_120--Hb_012272_010 Hb_010721_010 Hb_010721_010 Hb_005048_120--Hb_010721_010 Hb_001247_160 Hb_001247_160 Hb_005048_120--Hb_001247_160 Hb_094437_050 Hb_094437_050 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290 Hb_113676_010 Hb_113676_010 Hb_001459_040--Hb_113676_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_108670_010 Hb_108670_010 Hb_001459_040--Hb_108670_010 Hb_004112_060 Hb_004112_060 Hb_001459_040--Hb_004112_060 Hb_000592_070 Hb_000592_070 Hb_002133_010--Hb_000592_070 Hb_012400_020 Hb_012400_020 Hb_002133_010--Hb_012400_020 Hb_000997_130 Hb_000997_130 Hb_002133_010--Hb_000997_130 Hb_164577_010 Hb_164577_010 Hb_002133_010--Hb_164577_010 Hb_000069_530 Hb_000069_530 Hb_002133_010--Hb_000069_530 Hb_009252_090 Hb_009252_090 Hb_002133_010--Hb_009252_090 Hb_116103_010 Hb_116103_010 Hb_064885_010--Hb_116103_010 Hb_001002_020 Hb_001002_020 Hb_064885_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_064885_010--Hb_005928_010 Hb_000904_110 Hb_000904_110 Hb_064885_010--Hb_000904_110 Hb_054165_010 Hb_054165_010 Hb_064885_010--Hb_054165_010 Hb_000277_030 Hb_000277_030 Hb_064885_010--Hb_000277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.938831 17.024 20.4241 15.2787 0 0.747967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.635018 1.49865 0 0.114179 0.800413

CAGE analysis