Hb_007432_010

Information

Type -
Description -
Location Contig7432: 13839-14237
Sequence    

Annotation

kegg
ID brp:103875408
description uncharacterized LOC103875408
nr
ID KJB23230.1
description hypothetical protein B456_004G088300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2RVT2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G088300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007432_010 0.0 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
2 Hb_000111_440 0.2220675362 - - -
3 Hb_000663_070 0.2608722606 - - cyclin A, putative [Ricinus communis]
4 Hb_051997_010 0.263970557 - - -
5 Hb_000108_060 0.2656303029 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
6 Hb_004163_020 0.2658549454 - - -
7 Hb_003197_070 0.2659573979 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
8 Hb_000556_130 0.2686482541 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
9 Hb_000284_280 0.2711377408 - - -
10 Hb_000302_350 0.2788788515 - - polygalacturonase, putative [Ricinus communis]
11 Hb_000175_150 0.2841000003 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
12 Hb_000866_100 0.2904446365 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
13 Hb_000111_400 0.291153382 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
14 Hb_007617_040 0.2967009894 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
15 Hb_003740_030 0.2969750153 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
16 Hb_001329_170 0.2989464621 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
17 Hb_000362_140 0.3030962594 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
18 Hb_000107_670 0.3040598149 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
19 Hb_002641_040 0.3044827711 - - class III peroxidase [Populus trichocarpa]
20 Hb_007382_090 0.3108177785 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007432_010 Hb_007432_010 Hb_000111_440 Hb_000111_440 Hb_007432_010--Hb_000111_440 Hb_000663_070 Hb_000663_070 Hb_007432_010--Hb_000663_070 Hb_051997_010 Hb_051997_010 Hb_007432_010--Hb_051997_010 Hb_000108_060 Hb_000108_060 Hb_007432_010--Hb_000108_060 Hb_004163_020 Hb_004163_020 Hb_007432_010--Hb_004163_020 Hb_003197_070 Hb_003197_070 Hb_007432_010--Hb_003197_070 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_000111_440--Hb_051997_010 Hb_000034_150 Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_000556_130 Hb_000556_130 Hb_000663_070--Hb_000556_130 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_051997_010--Hb_000556_130 Hb_051997_010--Hb_007382_090 Hb_007617_040 Hb_007617_040 Hb_051997_010--Hb_007617_040 Hb_051997_010--Hb_000663_070 Hb_002321_040 Hb_002321_040 Hb_051997_010--Hb_002321_040 Hb_000108_060--Hb_003197_070 Hb_000302_350 Hb_000302_350 Hb_000108_060--Hb_000302_350 Hb_000108_060--Hb_000111_440 Hb_183671_010 Hb_183671_010 Hb_000108_060--Hb_183671_010 Hb_002397_060 Hb_002397_060 Hb_000108_060--Hb_002397_060 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150 Hb_003197_070--Hb_000302_350 Hb_003197_070--Hb_000111_440 Hb_000740_020 Hb_000740_020 Hb_003197_070--Hb_000740_020 Hb_001842_030 Hb_001842_030 Hb_003197_070--Hb_001842_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0844661 0 0.551663 0.264732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.157283 0 0 0

CAGE analysis