Hb_001842_030

Information

Type -
Description -
Location Contig1842: 97945-101463
Sequence    

Annotation

kegg
ID rcu:RCOM_0792890
description histone deacetylase 1, 2, 3, putative
nr
ID XP_012075872.1
description PREDICTED: histone deacetylase 9 [Jatropha curcas]
swissprot
ID Q8H0W2
description Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=1 SV=1
trembl
ID A0A067KET5
description Histone deacetylase OS=Jatropha curcas GN=JCGZ_10911 PE=3 SV=1
Gene Ontology
ID GO:0017136
description histone deacetylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 024_M19r.ab1: 102368-103920 , 053_K19r.ab1: 102413-103980

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_030 0.0 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
2 Hb_062038_010 0.2293237443 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
3 Hb_000612_040 0.2500131858 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
4 Hb_007553_020 0.2606700981 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002631_300 0.2653356254 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
6 Hb_000155_090 0.2714847165 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
7 Hb_002686_180 0.2756933726 - - PREDICTED: early nodulin-93-like [Populus euphratica]
8 Hb_001771_080 0.2782781549 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
9 Hb_000189_540 0.2791533593 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
10 Hb_000367_070 0.2796304458 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
11 Hb_000152_210 0.2837155763 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000045_280 0.2843674693 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
13 Hb_009486_210 0.2856452108 - - -
14 Hb_000394_110 0.2871677318 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_001754_140 0.2871941231 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
16 Hb_098533_020 0.292360861 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
17 Hb_001234_070 0.2925095493 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
18 Hb_003582_070 0.2937885091 - - conserved hypothetical protein [Ricinus communis]
19 Hb_178227_010 0.2954051459 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
20 Hb_000186_270 0.2961224558 - - hypothetical protein JCGZ_02112 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_030 Hb_001842_030 Hb_062038_010 Hb_062038_010 Hb_001842_030--Hb_062038_010 Hb_000612_040 Hb_000612_040 Hb_001842_030--Hb_000612_040 Hb_007553_020 Hb_007553_020 Hb_001842_030--Hb_007553_020 Hb_002631_300 Hb_002631_300 Hb_001842_030--Hb_002631_300 Hb_000155_090 Hb_000155_090 Hb_001842_030--Hb_000155_090 Hb_002686_180 Hb_002686_180 Hb_001842_030--Hb_002686_180 Hb_062038_010--Hb_007553_020 Hb_001234_070 Hb_001234_070 Hb_062038_010--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_062038_010--Hb_003582_070 Hb_062038_010--Hb_002686_180 Hb_000356_090 Hb_000356_090 Hb_062038_010--Hb_000356_090 Hb_001511_260 Hb_001511_260 Hb_062038_010--Hb_001511_260 Hb_150930_010 Hb_150930_010 Hb_000612_040--Hb_150930_010 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020 Hb_171900_060 Hb_171900_060 Hb_007553_020--Hb_171900_060 Hb_012340_050 Hb_012340_050 Hb_007553_020--Hb_012340_050 Hb_007553_020--Hb_001234_070 Hb_007553_020--Hb_003582_070 Hb_001863_130 Hb_001863_130 Hb_007553_020--Hb_001863_130 Hb_010560_030 Hb_010560_030 Hb_007553_020--Hb_010560_030 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_001767_060 Hb_001767_060 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_000155_090--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000155_090--Hb_007441_170 Hb_020805_060 Hb_020805_060 Hb_000155_090--Hb_020805_060 Hb_000155_090--Hb_000152_210 Hb_000352_200 Hb_000352_200 Hb_000155_090--Hb_000352_200 Hb_000011_300 Hb_000011_300 Hb_000155_090--Hb_000011_300 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360199 0.148278 0.463929 0.393213 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18414 0.796047 0.127691 0.059147 0

CAGE analysis