Hb_000175_150

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig175: 98810-102212
Sequence    

Annotation

kegg
ID pmum:103330821
description putative disease resistance RPP13-like protein 1
nr
ID KJB60547.1
description hypothetical protein B456_009G311700 [Gossypium raimondii]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A0D2SBI2
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G311700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16683: 103175-104979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_150 0.0 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
2 Hb_160246_010 0.1501409747 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_001143_150 0.2009165674 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
4 Hb_003740_030 0.2267327571 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
5 Hb_000663_070 0.2397756208 - - cyclin A, putative [Ricinus communis]
6 Hb_000111_430 0.2412397878 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
7 Hb_004163_020 0.2517453668 - - -
8 Hb_003540_020 0.264821859 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000917_170 0.2738755977 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
10 Hb_000740_020 0.27827599 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
11 Hb_007432_010 0.2841000003 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
12 Hb_000057_190 0.2841033131 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000866_100 0.2844579479 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
14 Hb_107429_010 0.2846295062 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
15 Hb_000034_150 0.2850095844 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
16 Hb_000111_400 0.2855000065 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
17 Hb_007382_090 0.2856038506 - - protein binding protein, putative [Ricinus communis]
18 Hb_000031_330 0.2859551973 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
19 Hb_002979_030 0.2930883165 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
20 Hb_000284_280 0.297850145 - - -

Gene co-expression network

sample Hb_000175_150 Hb_000175_150 Hb_160246_010 Hb_160246_010 Hb_000175_150--Hb_160246_010 Hb_001143_150 Hb_001143_150 Hb_000175_150--Hb_001143_150 Hb_003740_030 Hb_003740_030 Hb_000175_150--Hb_003740_030 Hb_000663_070 Hb_000663_070 Hb_000175_150--Hb_000663_070 Hb_000111_430 Hb_000111_430 Hb_000175_150--Hb_000111_430 Hb_004163_020 Hb_004163_020 Hb_000175_150--Hb_004163_020 Hb_160246_010--Hb_001143_150 Hb_003643_030 Hb_003643_030 Hb_160246_010--Hb_003643_030 Hb_003266_070 Hb_003266_070 Hb_160246_010--Hb_003266_070 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_006655_040 Hb_006655_040 Hb_160246_010--Hb_006655_040 Hb_001143_150--Hb_003266_070 Hb_001143_150--Hb_003643_030 Hb_034904_010 Hb_034904_010 Hb_001143_150--Hb_034904_010 Hb_000740_020 Hb_000740_020 Hb_001143_150--Hb_000740_020 Hb_000866_100 Hb_000866_100 Hb_003740_030--Hb_000866_100 Hb_007382_090 Hb_007382_090 Hb_003740_030--Hb_007382_090 Hb_001390_040 Hb_001390_040 Hb_003740_030--Hb_001390_040 Hb_007474_020 Hb_007474_020 Hb_003740_030--Hb_007474_020 Hb_034498_010 Hb_034498_010 Hb_003740_030--Hb_034498_010 Hb_000034_150 Hb_000034_150 Hb_003740_030--Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_000556_130 Hb_000556_130 Hb_000663_070--Hb_000556_130 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_006520_030 Hb_006520_030 Hb_000111_430--Hb_006520_030 Hb_008725_240 Hb_008725_240 Hb_000111_430--Hb_008725_240 Hb_003540_020 Hb_003540_020 Hb_000111_430--Hb_003540_020 Hb_000111_430--Hb_000034_150 Hb_003228_050 Hb_003228_050 Hb_000111_430--Hb_003228_050 Hb_002205_180 Hb_002205_180 Hb_000111_430--Hb_002205_180 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0371615 0.0174352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0144162 0 0.00572615 0

CAGE analysis