Hb_008725_240

Information

Type -
Description -
Location Contig8725: 132840-133995
Sequence    

Annotation

kegg
ID rcu:RCOM_1347750
description hypothetical protein
nr
ID XP_002515312.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNH3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61204: 132872-133877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006520_030 0.0988066744 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
3 Hb_010705_040 0.1053371365 - - PREDICTED: kinesin-4 [Jatropha curcas]
4 Hb_005288_090 0.1141319257 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
5 Hb_003777_260 0.1163755961 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
6 Hb_000364_140 0.117139157 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
7 Hb_002374_090 0.119582222 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
8 Hb_001998_180 0.1197407743 - - actin binding protein, putative [Ricinus communis]
9 Hb_004102_090 0.1249308629 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
10 Hb_011849_010 0.1252229689 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
11 Hb_003776_050 0.1262957303 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
12 Hb_000614_200 0.1264344769 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
13 Hb_007474_020 0.1268470955 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_101133_050 0.1277918274 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
15 Hb_080952_060 0.1278235547 - - PREDICTED: patellin-4 [Populus euphratica]
16 Hb_002205_180 0.1278356168 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
17 Hb_000340_550 0.1280073608 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
18 Hb_000069_510 0.1281577798 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
19 Hb_005116_120 0.1294138238 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_000060_030 0.1296282772 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008725_240 Hb_008725_240 Hb_006520_030 Hb_006520_030 Hb_008725_240--Hb_006520_030 Hb_010705_040 Hb_010705_040 Hb_008725_240--Hb_010705_040 Hb_005288_090 Hb_005288_090 Hb_008725_240--Hb_005288_090 Hb_003777_260 Hb_003777_260 Hb_008725_240--Hb_003777_260 Hb_000364_140 Hb_000364_140 Hb_008725_240--Hb_000364_140 Hb_002374_090 Hb_002374_090 Hb_008725_240--Hb_002374_090 Hb_011849_010 Hb_011849_010 Hb_006520_030--Hb_011849_010 Hb_001998_180 Hb_001998_180 Hb_006520_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_006520_030--Hb_003776_050 Hb_080952_060 Hb_080952_060 Hb_006520_030--Hb_080952_060 Hb_001969_120 Hb_001969_120 Hb_006520_030--Hb_001969_120 Hb_006520_030--Hb_003777_260 Hb_010705_040--Hb_000364_140 Hb_000441_210 Hb_000441_210 Hb_010705_040--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_010705_040--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_010705_040--Hb_004102_090 Hb_002205_180 Hb_002205_180 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_001257_070 Hb_001257_070 Hb_005288_090--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050 Hb_003777_260--Hb_000340_550 Hb_005116_120 Hb_005116_120 Hb_003777_260--Hb_005116_120 Hb_181744_010 Hb_181744_010 Hb_003777_260--Hb_181744_010 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_001439_240 Hb_001439_240 Hb_003777_260--Hb_001439_240 Hb_003777_260--Hb_005288_090 Hb_002473_030 Hb_002473_030 Hb_000364_140--Hb_002473_030 Hb_000364_140--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_000364_140--Hb_004032_390 Hb_001699_090 Hb_001699_090 Hb_000364_140--Hb_001699_090 Hb_001168_030 Hb_001168_030 Hb_000364_140--Hb_001168_030 Hb_002374_090--Hb_011849_010 Hb_000614_200 Hb_000614_200 Hb_002374_090--Hb_000614_200 Hb_119044_040 Hb_119044_040 Hb_002374_090--Hb_119044_040 Hb_002374_090--Hb_003776_050 Hb_000038_070 Hb_000038_070 Hb_002374_090--Hb_000038_070 Hb_000316_070 Hb_000316_070 Hb_002374_090--Hb_000316_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.140527 7.23667 2.8394 0.0622939 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.199531 0.0734481 0.353068 0.653061

CAGE analysis