Hb_001699_090

Information

Type -
Description -
Location Contig1699: 71225-74710
Sequence    

Annotation

kegg
ID rcu:RCOM_0572500
description hypothetical protein
nr
ID XP_002529641.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUH2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0572500 PE=4 SV=1
Gene Ontology
ID GO:0008168
description pyridoxal-phosphate-dependent serine hydroxymethyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15792: 72181-73985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002110_070 0.0764869096 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
3 Hb_011859_010 0.0876404944 - - hypothetical protein VITISV_027923 [Vitis vinifera]
4 Hb_002078_310 0.0978031377 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
5 Hb_006332_030 0.0984447997 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
6 Hb_001564_100 0.0993291635 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
7 Hb_008406_150 0.099451002 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
8 Hb_002205_220 0.1021010253 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
9 Hb_028995_020 0.1062084794 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
10 Hb_000675_130 0.1092479485 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
11 Hb_000193_170 0.1131750564 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
12 Hb_002473_030 0.1140882269 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
13 Hb_000084_230 0.1143160208 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
14 Hb_000364_140 0.1146780254 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
15 Hb_002837_030 0.1147641223 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000175_110 0.114984367 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
17 Hb_074660_010 0.1152907748 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_008226_050 0.1162306474 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
19 Hb_011218_020 0.1163587561 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003641_040 0.1191218765 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]

Gene co-expression network

sample Hb_001699_090 Hb_001699_090 Hb_002110_070 Hb_002110_070 Hb_001699_090--Hb_002110_070 Hb_011859_010 Hb_011859_010 Hb_001699_090--Hb_011859_010 Hb_002078_310 Hb_002078_310 Hb_001699_090--Hb_002078_310 Hb_006332_030 Hb_006332_030 Hb_001699_090--Hb_006332_030 Hb_001564_100 Hb_001564_100 Hb_001699_090--Hb_001564_100 Hb_008406_150 Hb_008406_150 Hb_001699_090--Hb_008406_150 Hb_002205_220 Hb_002205_220 Hb_002110_070--Hb_002205_220 Hb_002110_070--Hb_008406_150 Hb_000394_120 Hb_000394_120 Hb_002110_070--Hb_000394_120 Hb_000675_130 Hb_000675_130 Hb_002110_070--Hb_000675_130 Hb_028995_020 Hb_028995_020 Hb_002110_070--Hb_028995_020 Hb_011859_010--Hb_006332_030 Hb_011859_010--Hb_028995_020 Hb_011218_020 Hb_011218_020 Hb_011859_010--Hb_011218_020 Hb_011859_010--Hb_001564_100 Hb_000175_110 Hb_000175_110 Hb_011859_010--Hb_000175_110 Hb_005918_020 Hb_005918_020 Hb_011859_010--Hb_005918_020 Hb_002078_310--Hb_011859_010 Hb_002078_310--Hb_001564_100 Hb_002078_310--Hb_006332_030 Hb_002078_310--Hb_011218_020 Hb_005649_050 Hb_005649_050 Hb_002078_310--Hb_005649_050 Hb_006332_030--Hb_011218_020 Hb_006332_030--Hb_028995_020 Hb_012368_040 Hb_012368_040 Hb_006332_030--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_006332_030--Hb_003464_040 Hb_000563_110 Hb_000563_110 Hb_006332_030--Hb_000563_110 Hb_006788_130 Hb_006788_130 Hb_001564_100--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001564_100--Hb_000084_230 Hb_001235_040 Hb_001235_040 Hb_001564_100--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_001564_100--Hb_001220_020 Hb_001564_100--Hb_006332_030 Hb_000421_060 Hb_000421_060 Hb_008406_150--Hb_000421_060 Hb_008406_150--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_008406_150--Hb_004032_390 Hb_002473_030 Hb_002473_030 Hb_008406_150--Hb_002473_030 Hb_028903_010 Hb_028903_010 Hb_008406_150--Hb_028903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00872338 0.0230299 5.10193 1.20273 0 0.0629978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0311761 0 0.0557559 0.264403

CAGE analysis