Hb_002110_070

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig2110: 83178-83951
Sequence    

Annotation

kegg
ID tcc:TCM_034470
description Transcription factor, putative
nr
ID XP_012067956.1
description PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q6YXH5
description Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica GN=ZHD1 PE=2 SV=1
trembl
ID A0A067KZ47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15859 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21852: 83171-84299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_070 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
2 Hb_001699_090 0.0764869096 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002205_220 0.083127231 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
4 Hb_008406_150 0.0924868881 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
5 Hb_000394_120 0.096099702 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
6 Hb_000675_130 0.0962216093 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
7 Hb_028995_020 0.0990094763 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
8 Hb_000084_230 0.1085687714 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
9 Hb_006332_030 0.1087424612 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_001564_100 0.1087940294 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
11 Hb_000175_110 0.1157797194 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
12 Hb_004174_030 0.115833699 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
13 Hb_008226_050 0.1178293099 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
14 Hb_002928_150 0.1194496708 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_000045_040 0.1199932773 - - anthranilate synthase component I, putative [Ricinus communis]
16 Hb_001220_020 0.1200440129 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
17 Hb_000193_170 0.1208801019 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
18 Hb_011859_010 0.1215608198 - - hypothetical protein VITISV_027923 [Vitis vinifera]
19 Hb_000732_090 0.1219895379 - - cyclin d, putative [Ricinus communis]
20 Hb_004097_030 0.1223630411 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_070 Hb_002110_070 Hb_001699_090 Hb_001699_090 Hb_002110_070--Hb_001699_090 Hb_002205_220 Hb_002205_220 Hb_002110_070--Hb_002205_220 Hb_008406_150 Hb_008406_150 Hb_002110_070--Hb_008406_150 Hb_000394_120 Hb_000394_120 Hb_002110_070--Hb_000394_120 Hb_000675_130 Hb_000675_130 Hb_002110_070--Hb_000675_130 Hb_028995_020 Hb_028995_020 Hb_002110_070--Hb_028995_020 Hb_011859_010 Hb_011859_010 Hb_001699_090--Hb_011859_010 Hb_002078_310 Hb_002078_310 Hb_001699_090--Hb_002078_310 Hb_006332_030 Hb_006332_030 Hb_001699_090--Hb_006332_030 Hb_001564_100 Hb_001564_100 Hb_001699_090--Hb_001564_100 Hb_001699_090--Hb_008406_150 Hb_000375_200 Hb_000375_200 Hb_002205_220--Hb_000375_200 Hb_002205_220--Hb_028995_020 Hb_002205_220--Hb_000675_130 Hb_008226_050 Hb_008226_050 Hb_002205_220--Hb_008226_050 Hb_000175_110 Hb_000175_110 Hb_002205_220--Hb_000175_110 Hb_000421_060 Hb_000421_060 Hb_008406_150--Hb_000421_060 Hb_001220_020 Hb_001220_020 Hb_008406_150--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_008406_150--Hb_004032_390 Hb_002473_030 Hb_002473_030 Hb_008406_150--Hb_002473_030 Hb_028903_010 Hb_028903_010 Hb_008406_150--Hb_028903_010 Hb_000394_120--Hb_000675_130 Hb_001123_180 Hb_001123_180 Hb_000394_120--Hb_001123_180 Hb_003641_040 Hb_003641_040 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_000394_120--Hb_008226_050 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_008226_050 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_028995_020--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_028995_020--Hb_011218_020 Hb_028995_020--Hb_000175_110 Hb_000563_110 Hb_000563_110 Hb_028995_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_028995_020--Hb_001652_090 Hb_012368_040 Hb_012368_040 Hb_028995_020--Hb_012368_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.4798 0.667609 0 0.0377505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449436 0.110939

CAGE analysis