Hb_008406_150

Information

Type -
Description -
Location Contig8406: 101366-106702
Sequence    

Annotation

kegg
ID rcu:RCOM_1173500
description mitotic checkpoint serine/threonine-protein kinase bub1 and bubr1, putative
nr
ID XP_012088248.1
description PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
swissprot
ID F4IVI0
description Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Arabidopsis thaliana GN=BUB1 PE=1 SV=1
trembl
ID A0A067JVU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25762 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mitotic checkpoint serine threonine-protein kinase bub1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60117: 101681-103318 , PASA_asmbl_60118: 104277-104640 , PASA_asmbl_60119: 105907-107011 , PASA_asmbl_60120: 105907-106445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_150 0.0 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
2 Hb_000421_060 0.0806250963 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
3 Hb_001220_020 0.0839348402 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
4 Hb_004032_390 0.0843367707 - - CDK, putative [Ricinus communis]
5 Hb_002110_070 0.0924868881 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
6 Hb_002473_030 0.0974249469 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
7 Hb_028903_010 0.0988929258 - - hypothetical protein JCGZ_09851 [Jatropha curcas]
8 Hb_001699_090 0.099451002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001564_100 0.0996011474 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_004174_030 0.1023179451 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
11 Hb_003398_050 0.1030509117 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
12 Hb_162378_020 0.1032498824 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
13 Hb_000032_080 0.1035863661 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
14 Hb_002928_150 0.1055371501 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_001235_040 0.1057170937 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
16 Hb_002686_070 0.107981832 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001969_120 0.1090903135 - - PREDICTED: plectin [Jatropha curcas]
18 Hb_002205_220 0.1093879826 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
19 Hb_000084_230 0.1100627719 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
20 Hb_004007_080 0.1105514298 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]

Gene co-expression network

sample Hb_008406_150 Hb_008406_150 Hb_000421_060 Hb_000421_060 Hb_008406_150--Hb_000421_060 Hb_001220_020 Hb_001220_020 Hb_008406_150--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_008406_150--Hb_004032_390 Hb_002110_070 Hb_002110_070 Hb_008406_150--Hb_002110_070 Hb_002473_030 Hb_002473_030 Hb_008406_150--Hb_002473_030 Hb_028903_010 Hb_028903_010 Hb_008406_150--Hb_028903_010 Hb_000421_060--Hb_028903_010 Hb_000032_080 Hb_000032_080 Hb_000421_060--Hb_000032_080 Hb_002686_070 Hb_002686_070 Hb_000421_060--Hb_002686_070 Hb_000421_060--Hb_001220_020 Hb_162378_020 Hb_162378_020 Hb_000421_060--Hb_162378_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_004032_390--Hb_003398_050 Hb_004032_390--Hb_162378_020 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_004032_390--Hb_002928_150 Hb_004032_390--Hb_004174_030 Hb_001699_090 Hb_001699_090 Hb_002110_070--Hb_001699_090 Hb_002205_220 Hb_002205_220 Hb_002110_070--Hb_002205_220 Hb_000394_120 Hb_000394_120 Hb_002110_070--Hb_000394_120 Hb_000675_130 Hb_000675_130 Hb_002110_070--Hb_000675_130 Hb_028995_020 Hb_028995_020 Hb_002110_070--Hb_028995_020 Hb_005649_050 Hb_005649_050 Hb_002473_030--Hb_005649_050 Hb_004963_020 Hb_004963_020 Hb_002473_030--Hb_004963_020 Hb_002473_030--Hb_004032_390 Hb_002473_030--Hb_001220_020 Hb_002837_030 Hb_002837_030 Hb_002473_030--Hb_002837_030 Hb_002473_030--Hb_003398_050 Hb_028903_010--Hb_000032_080 Hb_028903_010--Hb_002686_070 Hb_005618_070 Hb_005618_070 Hb_028903_010--Hb_005618_070 Hb_028903_010--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0460322 4.89582 1.21154 0 0.0400995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0316665 0 0 0.179025 0.260461

CAGE analysis