Hb_000421_060

Information

Type -
Description -
Location Contig421: 50407-56559
Sequence    

Annotation

kegg
ID pop:POPTR_0005s13980g
description POPTRDRAFT_760413; hypothetical protein
nr
ID XP_012064905.1
description PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05594 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41595: 50111-51362 , PASA_asmbl_41598: 52105-52409 , PASA_asmbl_41601: 53732-54161 , PASA_asmbl_41602: 54552-55046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_060 0.0 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
2 Hb_028903_010 0.0664660482 - - hypothetical protein JCGZ_09851 [Jatropha curcas]
3 Hb_008406_150 0.0806250963 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
4 Hb_000032_080 0.0865539218 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
5 Hb_002686_070 0.0948052614 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001220_020 0.0990896731 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_162378_020 0.0992488618 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
8 Hb_004032_390 0.102441561 - - CDK, putative [Ricinus communis]
9 Hb_002473_030 0.1025266008 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
10 Hb_011063_030 0.1053602574 - - protein with unknown function [Ricinus communis]
11 Hb_001210_030 0.1083111339 - - PREDICTED: plectin [Jatropha curcas]
12 Hb_004459_030 0.1099849144 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
13 Hb_001969_120 0.1115097704 - - PREDICTED: plectin [Jatropha curcas]
14 Hb_064396_010 0.1142341195 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001235_040 0.1151629251 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
16 Hb_003398_050 0.1169929493 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
17 Hb_119044_040 0.1185618582 - - cyclin B, putative [Ricinus communis]
18 Hb_003776_050 0.1186955687 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
19 Hb_000664_080 0.1188275531 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
20 Hb_002197_010 0.119822265 - - cyclin d, putative [Ricinus communis]

Gene co-expression network

sample Hb_000421_060 Hb_000421_060 Hb_028903_010 Hb_028903_010 Hb_000421_060--Hb_028903_010 Hb_008406_150 Hb_008406_150 Hb_000421_060--Hb_008406_150 Hb_000032_080 Hb_000032_080 Hb_000421_060--Hb_000032_080 Hb_002686_070 Hb_002686_070 Hb_000421_060--Hb_002686_070 Hb_001220_020 Hb_001220_020 Hb_000421_060--Hb_001220_020 Hb_162378_020 Hb_162378_020 Hb_000421_060--Hb_162378_020 Hb_028903_010--Hb_000032_080 Hb_028903_010--Hb_008406_150 Hb_028903_010--Hb_002686_070 Hb_005618_070 Hb_005618_070 Hb_028903_010--Hb_005618_070 Hb_028903_010--Hb_001220_020 Hb_008406_150--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_008406_150--Hb_004032_390 Hb_002110_070 Hb_002110_070 Hb_008406_150--Hb_002110_070 Hb_002473_030 Hb_002473_030 Hb_008406_150--Hb_002473_030 Hb_000032_080--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_000032_080--Hb_011063_030 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_002686_070--Hb_064396_010 Hb_002686_070--Hb_162378_020 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_162378_020--Hb_011063_030 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_064396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0317196 2.94035 0.665592 0 0.00389222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291404 0 0.0146995 0.202771 0.180436

CAGE analysis