Hb_034904_010

Information

Type -
Description -
Location Contig34904: 1442-3138
Sequence    

Annotation

kegg
ID bvg:104896756
description uncharacterized LOC104896756
nr
ID XP_012453215.1
description PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MYZ3
description Protein MCM10 OS=Gossypium arboreum GN=F383_31527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034904_010 0.0 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
2 Hb_001226_010 0.2091681694 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
3 Hb_001322_030 0.2391849836 - - triacylglycerol lipase, putative [Ricinus communis]
4 Hb_001470_070 0.2412137718 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_007145_010 0.2462922158 - - ammonium transporter 3.1-like protein [Camellia sinensis]
6 Hb_001143_150 0.2466431023 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
7 Hb_005144_190 0.2701941021 - - hypothetical protein F383_09558 [Gossypium arboreum]
8 Hb_006503_010 0.2710738512 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_000112_100 0.2728700859 - - glutamate receptor 2 plant, putative [Ricinus communis]
10 Hb_011972_010 0.2890293387 - - conserved hypothetical protein [Ricinus communis]
11 Hb_160246_010 0.2936706356 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_000031_330 0.2953706281 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
13 Hb_001269_250 0.2987511094 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
14 Hb_026527_040 0.2988287313 - - conserved hypothetical protein [Ricinus communis]
15 Hb_107429_010 0.3072287155 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
16 Hb_002675_200 0.3081084819 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
17 Hb_000740_020 0.3084505511 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
18 Hb_103739_010 0.3101923364 - - sodium/hydrogen exchanger, putative [Ricinus communis]
19 Hb_001269_460 0.3104997007 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
20 Hb_001437_160 0.3107928465 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_034904_010 Hb_034904_010 Hb_001226_010 Hb_001226_010 Hb_034904_010--Hb_001226_010 Hb_001322_030 Hb_001322_030 Hb_034904_010--Hb_001322_030 Hb_001470_070 Hb_001470_070 Hb_034904_010--Hb_001470_070 Hb_007145_010 Hb_007145_010 Hb_034904_010--Hb_007145_010 Hb_001143_150 Hb_001143_150 Hb_034904_010--Hb_001143_150 Hb_005144_190 Hb_005144_190 Hb_034904_010--Hb_005144_190 Hb_001226_010--Hb_001322_030 Hb_001437_160 Hb_001437_160 Hb_001226_010--Hb_001437_160 Hb_000740_020 Hb_000740_020 Hb_001226_010--Hb_000740_020 Hb_103739_010 Hb_103739_010 Hb_001226_010--Hb_103739_010 Hb_001226_010--Hb_007145_010 Hb_001322_030--Hb_007145_010 Hb_011972_010 Hb_011972_010 Hb_001322_030--Hb_011972_010 Hb_001322_030--Hb_001470_070 Hb_128486_010 Hb_128486_010 Hb_001322_030--Hb_128486_010 Hb_002675_200 Hb_002675_200 Hb_001470_070--Hb_002675_200 Hb_001470_070--Hb_007145_010 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_001470_070--Hb_005144_190 Hb_007145_010--Hb_011972_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010 Hb_160246_010 Hb_160246_010 Hb_001143_150--Hb_160246_010 Hb_003266_070 Hb_003266_070 Hb_001143_150--Hb_003266_070 Hb_000175_150 Hb_000175_150 Hb_001143_150--Hb_000175_150 Hb_003643_030 Hb_003643_030 Hb_001143_150--Hb_003643_030 Hb_001143_150--Hb_000740_020 Hb_000886_030 Hb_000886_030 Hb_005144_190--Hb_000886_030 Hb_003687_220 Hb_003687_220 Hb_005144_190--Hb_003687_220 Hb_000599_310 Hb_000599_310 Hb_005144_190--Hb_000599_310 Hb_002631_300 Hb_002631_300 Hb_005144_190--Hb_002631_300 Hb_001623_070 Hb_001623_070 Hb_005144_190--Hb_001623_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0259748 0.074189 0.0529977 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.112071 0 0.0227142 0

CAGE analysis