Hb_011972_010

Information

Type -
Description -
Location Contig11972: 18079-18324
Sequence    

Annotation

kegg
ID rcu:RCOM_0145330
description hypothetical protein
nr
ID XP_002533928.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05928: 17972-18325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011972_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001322_030 0.1914873501 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_007145_010 0.2201849936 - - ammonium transporter 3.1-like protein [Camellia sinensis]
4 Hb_000352_200 0.2429947769 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
5 Hb_001470_070 0.2431865899 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_002675_200 0.2534813926 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
7 Hb_001269_460 0.2583894676 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
8 Hb_128486_010 0.2599860483 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
9 Hb_040359_010 0.2611780803 - - triacylglycerol lipase, putative [Ricinus communis]
10 Hb_001226_010 0.2712757054 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
11 Hb_000155_090 0.2724515079 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
12 Hb_090065_010 0.2877324982 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_012379_010 0.2884567951 - - -
14 Hb_034904_010 0.2890293387 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
15 Hb_000152_210 0.2917976854 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003633_100 0.2918580295 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
17 Hb_005144_190 0.2924236399 - - hypothetical protein F383_09558 [Gossypium arboreum]
18 Hb_089140_110 0.2957009507 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_006018_050 0.2968014956 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
20 Hb_106552_070 0.2997849165 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011972_010 Hb_011972_010 Hb_001322_030 Hb_001322_030 Hb_011972_010--Hb_001322_030 Hb_007145_010 Hb_007145_010 Hb_011972_010--Hb_007145_010 Hb_000352_200 Hb_000352_200 Hb_011972_010--Hb_000352_200 Hb_001470_070 Hb_001470_070 Hb_011972_010--Hb_001470_070 Hb_002675_200 Hb_002675_200 Hb_011972_010--Hb_002675_200 Hb_001269_460 Hb_001269_460 Hb_011972_010--Hb_001269_460 Hb_001322_030--Hb_007145_010 Hb_001226_010 Hb_001226_010 Hb_001322_030--Hb_001226_010 Hb_001322_030--Hb_001470_070 Hb_034904_010 Hb_034904_010 Hb_001322_030--Hb_034904_010 Hb_128486_010 Hb_128486_010 Hb_001322_030--Hb_128486_010 Hb_007145_010--Hb_001470_070 Hb_007145_010--Hb_001226_010 Hb_007145_010--Hb_034904_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010 Hb_002309_050 Hb_002309_050 Hb_000352_200--Hb_002309_050 Hb_000189_540 Hb_000189_540 Hb_000352_200--Hb_000189_540 Hb_000152_210 Hb_000152_210 Hb_000352_200--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_004787_040 Hb_004787_040 Hb_000352_200--Hb_004787_040 Hb_001470_070--Hb_002675_200 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001470_070--Hb_034904_010 Hb_128524_020 Hb_128524_020 Hb_002675_200--Hb_128524_020 Hb_011618_100 Hb_011618_100 Hb_002675_200--Hb_011618_100 Hb_002675_200--Hb_128486_010 Hb_089140_110 Hb_089140_110 Hb_002675_200--Hb_089140_110 Hb_008768_020 Hb_008768_020 Hb_002675_200--Hb_008768_020 Hb_001269_460--Hb_040359_010 Hb_006018_050 Hb_006018_050 Hb_001269_460--Hb_006018_050 Hb_003938_030 Hb_003938_030 Hb_001269_460--Hb_003938_030 Hb_027445_040 Hb_027445_040 Hb_001269_460--Hb_027445_040 Hb_003633_100 Hb_003633_100 Hb_001269_460--Hb_003633_100 Hb_105226_010 Hb_105226_010 Hb_001269_460--Hb_105226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.593263 201.031 454.435 130.111 0 0.305915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8865 575.086 40.191 5.16634 21.8292

CAGE analysis