Hb_027445_040

Information

Type -
Description -
Location Contig27445: 42077-42403
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10610g
description POPTRDRAFT_908579; hypothetical protein
nr
ID XP_011014136.1
description PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9IJK6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28739: 42287-42595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_040 0.0 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
2 Hb_008173_060 0.1646314581 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
3 Hb_005375_060 0.200374314 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
4 Hb_000462_080 0.2026724306 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
5 Hb_007163_080 0.213402801 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
6 Hb_005348_090 0.2140567006 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
7 Hb_004452_090 0.2141462507 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
8 Hb_001269_460 0.2145364446 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
9 Hb_005701_110 0.2196299219 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
10 Hb_005883_070 0.2198223629 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
11 Hb_000134_030 0.2205113222 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
12 Hb_001007_090 0.2213826631 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
13 Hb_002151_130 0.2236553843 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
14 Hb_004970_070 0.2255809827 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
15 Hb_002217_190 0.2265203016 - - invertase [Hevea brasiliensis]
16 Hb_008115_030 0.2305340198 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
17 Hb_001040_060 0.2316603157 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
18 Hb_004116_120 0.2340206399 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
19 Hb_012545_030 0.2384249807 - - Polyadenylate-binding protein RBP47C [Glycine soja]
20 Hb_002078_230 0.2395046069 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_027445_040 Hb_027445_040 Hb_008173_060 Hb_008173_060 Hb_027445_040--Hb_008173_060 Hb_005375_060 Hb_005375_060 Hb_027445_040--Hb_005375_060 Hb_000462_080 Hb_000462_080 Hb_027445_040--Hb_000462_080 Hb_007163_080 Hb_007163_080 Hb_027445_040--Hb_007163_080 Hb_005348_090 Hb_005348_090 Hb_027445_040--Hb_005348_090 Hb_004452_090 Hb_004452_090 Hb_027445_040--Hb_004452_090 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_008173_060--Hb_004452_090 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_001581_040 Hb_001581_040 Hb_005375_060--Hb_001581_040 Hb_005375_060--Hb_007163_080 Hb_002045_260 Hb_002045_260 Hb_005375_060--Hb_002045_260 Hb_005375_060--Hb_000462_080 Hb_011622_010 Hb_011622_010 Hb_005375_060--Hb_011622_010 Hb_042098_010 Hb_042098_010 Hb_005375_060--Hb_042098_010 Hb_001040_060 Hb_001040_060 Hb_000462_080--Hb_001040_060 Hb_000462_080--Hb_007545_110 Hb_000500_370 Hb_000500_370 Hb_000462_080--Hb_000500_370 Hb_002095_050 Hb_002095_050 Hb_000462_080--Hb_002095_050 Hb_000462_080--Hb_008173_060 Hb_002151_130 Hb_002151_130 Hb_007163_080--Hb_002151_130 Hb_007163_080--Hb_011622_010 Hb_061908_030 Hb_061908_030 Hb_007163_080--Hb_061908_030 Hb_003751_100 Hb_003751_100 Hb_007163_080--Hb_003751_100 Hb_183192_010 Hb_183192_010 Hb_007163_080--Hb_183192_010 Hb_001242_180 Hb_001242_180 Hb_005348_090--Hb_001242_180 Hb_005348_090--Hb_002151_130 Hb_000003_240 Hb_000003_240 Hb_005348_090--Hb_000003_240 Hb_000260_300 Hb_000260_300 Hb_005348_090--Hb_000260_300 Hb_124677_020 Hb_124677_020 Hb_005348_090--Hb_124677_020 Hb_004235_060 Hb_004235_060 Hb_005348_090--Hb_004235_060 Hb_005701_110 Hb_005701_110 Hb_004452_090--Hb_005701_110 Hb_000236_480 Hb_000236_480 Hb_004452_090--Hb_000236_480 Hb_001155_050 Hb_001155_050 Hb_004452_090--Hb_001155_050 Hb_004452_090--Hb_002217_190 Hb_004452_090--Hb_001040_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254948 3.98228 8.98546 2.34419 0.1299 0.118992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304134 1.67433 0.354743 1.95628 0

CAGE analysis