Hb_007145_010

Information

Type -
Description -
Location Contig7145: 14747-21724
Sequence    

Annotation

kegg
ID rcu:RCOM_0862770
description ammonium transporter, putative
nr
ID AKI88009.1
description ammonium transporter 3.1-like protein [Camellia sinensis]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID A0A068U7R4
description Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018595001 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007145_010 0.0 - - ammonium transporter 3.1-like protein [Camellia sinensis]
2 Hb_001322_030 0.1224948563 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_001470_070 0.1973874982 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_001226_010 0.2182222999 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
5 Hb_011972_010 0.2201849936 - - conserved hypothetical protein [Ricinus communis]
6 Hb_034904_010 0.2462922158 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
7 Hb_040359_010 0.2507976833 - - triacylglycerol lipase, putative [Ricinus communis]
8 Hb_105226_010 0.2613689398 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
9 Hb_005144_190 0.2710588012 - - hypothetical protein F383_09558 [Gossypium arboreum]
10 Hb_002675_200 0.272872753 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
11 Hb_001269_460 0.2800551503 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
12 Hb_128486_010 0.2846934107 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
13 Hb_006018_050 0.2869859243 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
14 Hb_006503_010 0.2897739657 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_090065_010 0.2935589999 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_089140_110 0.2995648054 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_002173_010 0.3093936318 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_001016_020 0.3104737323 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000216_010 0.3113431623 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
20 Hb_003938_030 0.3133331216 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007145_010 Hb_007145_010 Hb_001322_030 Hb_001322_030 Hb_007145_010--Hb_001322_030 Hb_001470_070 Hb_001470_070 Hb_007145_010--Hb_001470_070 Hb_001226_010 Hb_001226_010 Hb_007145_010--Hb_001226_010 Hb_011972_010 Hb_011972_010 Hb_007145_010--Hb_011972_010 Hb_034904_010 Hb_034904_010 Hb_007145_010--Hb_034904_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010 Hb_001322_030--Hb_001226_010 Hb_001322_030--Hb_011972_010 Hb_001322_030--Hb_001470_070 Hb_001322_030--Hb_034904_010 Hb_128486_010 Hb_128486_010 Hb_001322_030--Hb_128486_010 Hb_002675_200 Hb_002675_200 Hb_001470_070--Hb_002675_200 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001470_070--Hb_034904_010 Hb_001226_010--Hb_034904_010 Hb_001437_160 Hb_001437_160 Hb_001226_010--Hb_001437_160 Hb_000740_020 Hb_000740_020 Hb_001226_010--Hb_000740_020 Hb_103739_010 Hb_103739_010 Hb_001226_010--Hb_103739_010 Hb_000352_200 Hb_000352_200 Hb_011972_010--Hb_000352_200 Hb_011972_010--Hb_001470_070 Hb_011972_010--Hb_002675_200 Hb_001269_460 Hb_001269_460 Hb_011972_010--Hb_001269_460 Hb_001143_150 Hb_001143_150 Hb_034904_010--Hb_001143_150 Hb_034904_010--Hb_005144_190 Hb_040359_010--Hb_001269_460 Hb_105226_010 Hb_105226_010 Hb_040359_010--Hb_105226_010 Hb_006018_050 Hb_006018_050 Hb_040359_010--Hb_006018_050 Hb_003938_030 Hb_003938_030 Hb_040359_010--Hb_003938_030 Hb_040359_010--Hb_002675_200 Hb_040359_010--Hb_001470_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.347732 0.384347 0.276727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.618099 0 0.0102859 0.0537847

CAGE analysis